FvH4_3g06731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000274
Physical Location & Seq
Forward (+)
3873180 .. 3873813
634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06731.t1

Sequence Viewer

Length: 390 bp
ATGAGTGAGCCTCAGATTCCAACCCAAAATTCAGAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACGAAGGCTTACAGTGAGCAACCACCAGAGTCACCACCAAGGAGGACGGTTGCGGAAGAAGCGCGTTGGTCGCCGAAAACACCAGTGACAGAGATGCCTTCTTTTGATTTGGGAATCTCTCCCTGGATATCTTGGAATAGCCCATTGGTGACTGGAATAATAACCATACCAGAGAAGAATTTCAATACTCCCTCTAGCCCTCAAATCATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTCTCTCCACAGGTAACTGCCAACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

4.62

Isoelectric Point (pI)

80.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 158
AcsI RAATTY 2 cut(s) 28, 283
AgsI TTSAA 2 cut(s) 50, 289
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 4 cut(s) 13, 45, 233, 265
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 28, 283
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 129, 265
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 143, 227
Bse1I ACTGG 2 cut(s) 188, 262
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 143, 227
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 188, 262
Bsh1236I CGCG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 367
BsmBI CGTCTC 1 cut(s) 367
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 66
BsrI ACTGG 2 cut(s) 188, 262
BssECI CCNNGG 2 cut(s) 143, 227
BssMI GATC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 119, 154
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 2 cut(s) 164, 175
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 124, 195
BveI ACCTGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 169
CviJI RGCY 5 cut(s) 10, 76, 113, 246, 303
CviKI_1 RGCY 5 cut(s) 10, 76, 113, 246, 303
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 143
Eco32I GATATC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 227
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 367
FaiI YATR 3 cut(s) 43, 45, 272
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 3 cut(s) 16, 134, 219
HphI GGTGA 2 cut(s) 129, 265
Hpy188I TCNGA 2 cut(s) 15, 34
HpyAV CCTTC 2 cut(s) 103, 213
HpyCH4III ACNGT 2 cut(s) 119, 154
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 175
HpyF3I CTNAG 1 cut(s) 12
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 1 cut(s) 357
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 9 cut(s) 144, 201, 214, 241, 243, 288, 354, 356, 365
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 135, 190, 253, 373
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 7 cut(s) 47, 62, 83, 97, 100, 173, 292
MluCI AATT 3 cut(s) 28, 53, 283
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 5 cut(s) 21, 61, 141, 307, 315
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 164, 175
NdeII GATC 1 cut(s) 357
NmuCI GTSAC 3 cut(s) 135, 190, 253
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 16, 219
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 357
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 229
SetI ASST 5 cut(s) 78, 321, 343, 375, 387
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 28, 53, 283
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 119, 154
TasI AATT 3 cut(s) 28, 53, 283
TfiI GAWTC 2 cut(s) 16, 219
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 124, 195
TseFI GTSAC 3 cut(s) 135, 190, 253
Tsp45I GTSAC 3 cut(s) 135, 190, 253
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 2 cut(s) 124, 195
XapI RAATTY 2 cut(s) 28, 283
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.