Rroxscaffold_3G00250710

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000274
Physical Location & Seq
Forward (+)
44502252 .. 44508397
6146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250710.1

Sequence Viewer

Length: 237 bp
ATGAGCAAATTTGGAGGTCCCAATAGCAACACTCTTTATATCAAGCTCATTGATCGCGCCCTGCAGTTGGGATCGGTGCTCCTCGAGGCCGGTAAGATCTCGGCGAGACGACGAGCCTCCAAGCACAACTCCATCTCCCGGGCTCTCCTCTCGACCTCACCATCAAGCGTTAAAGCTGCCCGTGCGAGCCACTCAAAGCTCCTCCACCGGCCATGTGCTGGTTGTTATTACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

78

Amino Acids

8.45

Weight (kDa)

10.76

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 218
AccII CGCG 1 cut(s) 57
AclWI GGATC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 67, 138, 218
AluBI AGCT 3 cut(s) 46, 176, 199
AluI AGCT 3 cut(s) 46, 176, 199
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 79
Ama87I CYCGRG 2 cut(s) 83, 138
AoxI GGCC 2 cut(s) 87, 209
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 8
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 139, 140
AsuHPI GGTGA 1 cut(s) 150
AvaI CYCGRG 2 cut(s) 83, 138
AvaII GGWCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 140, 169
BcnI CCSGG 2 cut(s) 139, 140
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 62
BglII AGATCT 1 cut(s) 96
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 139, 140
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 2 cut(s) 83, 138
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 139, 140
BpuMI CCSGG 2 cut(s) 139, 140
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 138, 218
Bse118I RCCGGY 2 cut(s) 89, 207
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 67, 138, 218
BseRI GAGGAG 3 cut(s) 71, 137, 191
BseXI GCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 89, 211
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 2 cut(s) 83, 138
BsiSI CCGG 3 cut(s) 90, 139, 208
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 3 cut(s) 67, 138, 218
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 2 cut(s) 89, 211
BsoBI CYCGRG 2 cut(s) 83, 138
Bsp1286I GDGCHC 2 cut(s) 81, 145
Bsp143I GATC 3 cut(s) 52, 71, 96
BspANI GGCC 2 cut(s) 89, 211
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 79
BsrFI RCCGGY 2 cut(s) 89, 207
BssAI RCCGGY 2 cut(s) 89, 207
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 52, 71, 96
BstC8I GCNNGC 1 cut(s) 187
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 55, 74, 99
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 52, 71, 96
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 137, 138
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 2 cut(s) 89, 211
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 2 cut(s) 89, 207
Cfr13I GGNCC 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 138
CviAII CATG 1 cut(s) 213
CviJI RGCY 8 cut(s) 46, 89, 116, 143, 176, 189, 199, 211
CviKI_1 RGCY 8 cut(s) 46, 89, 116, 143, 176, 189, 199, 211
DpnI GATC 3 cut(s) 54, 73, 98
DpnII GATC 3 cut(s) 52, 71, 96
EaeI YGGCCR 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 2 cut(s) 83, 138
EcoO109I RGGNCCY 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 39, 214
FaqI GGGAC 1 cut(s) 3
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 235
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 89, 211
HapII CCGG 3 cut(s) 90, 139, 208
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HpaII CCGG 3 cut(s) 90, 139, 208
HphI GGTGA 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 52, 71, 96
LmnI GCTCC 2 cut(s) 84, 204
LpnPI CCDG 5 cut(s) 74, 103, 152, 204, 221
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 235
MalI GATC 3 cut(s) 54, 73, 98
MboI GATC 3 cut(s) 52, 71, 96
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 2 cut(s) 81, 145
MluCI AATT 1 cut(s) 8
MnlI CCTC 7 cut(s) 8, 79, 92, 127, 158, 166, 212
MseI TTAA 1 cut(s) 171
MspI CCGG 3 cut(s) 90, 139, 208
MspR9I CCNGG 2 cut(s) 139, 140
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 2 cut(s) 139, 140
NdeII GATC 3 cut(s) 52, 71, 96
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 83
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 96
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 52, 71, 96
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 139, 140
SduI GDGCHC 2 cut(s) 81, 145
SetI ASST 5 cut(s) 19, 48, 158, 178, 201
SfcI CTRYAG 1 cut(s) 62
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 83
SmaI CCCGGG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 137, 138
TaqI TCGA 2 cut(s) 84, 152
TasI AATT 1 cut(s) 8
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 176
TspMI CCCGGG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 138
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.