FvH4_4g10501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000274
Physical Location & Seq
Forward (+)
14281140 .. 14281817
678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10501.t1

Sequence Viewer

Length: 678 bp
ATGAGACGGCTAACAGAGGAGAACGAAAGGCTACGCTGTCAAACTGAAAGCTTGAAAGAGGAAATGAGAAACATGGCAGAGGAGTATGAATCAAGGCAGACAAAACTACAAGAGAAGATGGAAAATACAGTACAGGATTTGACGATTGAGAGGTTAATTAACAATGAAACAAGGTTGCAGAGTGAAAAACTCAATGAAGTACTGAAGAAGCTACAAGCTTTGGTGGCGGCATTAACACCAAACTCTCAAGATGAGAAAGCTCTGGAAAGCAATGAAGATGATCAGGATCCTGAAGGAGGAGCAAACAAGGGAGGAAAAAACAATGAAGATTTGAAGGACAAGGAAGCTGATAAGGTAGCTGAAGAAGATGATGACAAGGAAGCGGATAAGGATCCTGAAGGAACTGGCAAGGAAGATGAAGCAGTTGAGAAAATGGAGGAAACAAAAGAGAAAGAGGAGGAGACGGCAGAGAAAGATGCCAGTGCTGAAGATAAGAGTGAGGCAGTAGAGAACATAGCTCAGCTTTCAATGCAAAATTCGGAAGAATTAGATCTTGAAGCATTAGAACAGGTTGAGAGAGAGCTAAAAAAGAACATGGCCGATGAGGATGATAAAGAGAAGGAAGAGGCAGCAGAGAAAGATGCAAGCGCTCATAAAAAAGAGATGAGTGAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.72

Weight (kDa)

4.36

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 227, 383
AclWI GGATC 4 cut(s) 281, 294, 386, 399
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 5 cut(s) 224, 312, 381, 417, 507
AfaI GTAC 2 cut(s) 132, 201
AfeI AGCGCT 1 cut(s) 649
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 55, 334, 528, 557
AluBI AGCT 9 cut(s) 51, 211, 218, 260, 347, 359, 518, 523, 583
AluI AGCT 9 cut(s) 51, 211, 218, 260, 347, 359, 518, 523, 583
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 4 cut(s) 281, 294, 386, 399
Aor51HI AGCGCT 1 cut(s) 649
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 1 cut(s) 535
AspLEI GCGC 1 cut(s) 650
BamHI GGATCC 2 cut(s) 286, 391
BbvI GCAGC 1 cut(s) 641
BccI CCATC 1 cut(s) 112
BceAI ACGGC 2 cut(s) 23, 480
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 455
BfoI RGCGCY 1 cut(s) 651
BglII AGATCT 1 cut(s) 550
BisI GCNGC 2 cut(s) 228, 630
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 2 cut(s) 229, 631
BmcAI AGTACT 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 288, 393
BmsI GCATC 2 cut(s) 466, 631
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 231
BsaBI GATNNNNATC 2 cut(s) 285, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 409, 480
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 2 cut(s) 285, 390
BseGI GGATG 1 cut(s) 613
BseJI GATNNNNATC 2 cut(s) 285, 390
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 2 cut(s) 409, 480
BseRI GAGGAG 5 cut(s) 32, 95, 312, 470, 473
BseXI GCAGC 1 cut(s) 641
BshFI GGCC 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsnI GGCC 1 cut(s) 599
Bsp143I GATC 4 cut(s) 280, 286, 391, 550
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 2 cut(s) 227, 383
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 288, 393
BspPI GGATC 4 cut(s) 281, 294, 386, 399
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 2 cut(s) 409, 480
BssMI GATC 4 cut(s) 280, 286, 391, 550
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 2 cut(s) 519, 675
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 613
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 1 cut(s) 650
BstKTI GATC 4 cut(s) 283, 289, 394, 553
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 4 cut(s) 280, 286, 391, 550
BstMWI GCNNNNNNNGC 2 cut(s) 224, 529
BstV1I GCAGC 1 cut(s) 641
BstX2I RGATCY 3 cut(s) 286, 391, 550
BstYI RGATCY 3 cut(s) 286, 391, 550
BsuRI GGCC 1 cut(s) 599
BtsCI GGATG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 646
CfoI GCGC 1 cut(s) 650
Csp6I GTAC 2 cut(s) 131, 200
CviAII CATG 2 cut(s) 73, 595
CviQI GTAC 2 cut(s) 131, 200
DdeI CTNAG 2 cut(s) 519, 675
DpnI GATC 4 cut(s) 282, 288, 393, 552
DpnII GATC 4 cut(s) 280, 286, 391, 550
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco47III AGCGCT 1 cut(s) 649
Eco57I CTGAAG 5 cut(s) 224, 312, 381, 417, 507
EcoNI CCTNNNNNAGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 2 cut(s) 76, 598
FaiI YATR 5 cut(s) 74, 87, 515, 596, 654
FatI CATG 2 cut(s) 72, 594
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 228, 630
FokI GGATG 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 228, 630
GlaI GCGC 1 cut(s) 649
GluI GCNGC 2 cut(s) 228, 630
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 1 cut(s) 599
HhaI GCGC 1 cut(s) 650
Hin1II CATG 2 cut(s) 76, 598
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HindIII AAGCTT 2 cut(s) 49, 216
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 6 cut(s) 248, 263, 284, 290, 395, 554
HpyAV CCTTC 4 cut(s) 287, 328, 392, 613
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 178, 532, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 529
HpyF3I CTNAG 2 cut(s) 519, 675
Hsp92II CATG 2 cut(s) 76, 598
HspAI GCGC 1 cut(s) 648
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 280, 286, 391, 550
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 8 cut(s) 119, 248, 269, 303, 390, 408, 493, 554
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 2 cut(s) 466, 631
MalI GATC 4 cut(s) 282, 288, 393, 552
MboI GATC 4 cut(s) 280, 286, 391, 550
MflI RGATCY 3 cut(s) 286, 391, 550
MluCI AATT 3 cut(s) 156, 535, 545
MseI TTAA 3 cut(s) 155, 159, 233
MwoI GCNNNNNNNGC 2 cut(s) 224, 529
NdeII GATC 4 cut(s) 280, 286, 391, 550
NlaIII CATG 2 cut(s) 76, 598
NlaIV GGNNCC 2 cut(s) 288, 393
PacI TTAATTAA 1 cut(s) 159
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 229, 631
PspN4I GGNNCC 2 cut(s) 288, 393
PsuI RGATCY 3 cut(s) 286, 391, 550
RsaI GTAC 2 cut(s) 132, 201
RsaNI GTAC 2 cut(s) 131, 200
SaqAI TTAA 3 cut(s) 155, 159, 233
SatI GCNGC 2 cut(s) 228, 630
Sau3AI GATC 4 cut(s) 280, 286, 391, 550
ScaI AGTACT 1 cut(s) 201
SfaNI GCATC 2 cut(s) 466, 631
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 3 cut(s) 156, 535, 545
SsiI CCGC 2 cut(s) 227, 383
TaaI ACNGT 1 cut(s) 130
TasI AATT 3 cut(s) 156, 535, 545
TatI WGTACW 2 cut(s) 130, 199
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 155, 159, 233
Tru9I TTAA 3 cut(s) 155, 159, 233
TscAI CASTG 1 cut(s) 487
TseI GCWGC 1 cut(s) 629
TspDTI ATGAA 6 cut(s) 102, 180, 210, 288, 339, 432
TspRI CASTG 1 cut(s) 487
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 535
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.