Rmu_sc0006388.1_g000017

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006388.1
OG0000274
Physical Location & Seq
Forward (+)
92166 .. 94004
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006388.1_g000017.1.cds

Sequence Viewer

Length: 498 bp
atggcgtctagtacgtctccgacctctgcattgtcaccgctggggccacgacgagtccaggctcaacttgccacagaggaatgtctctctcttccgcaagatcatatctccgctggcaagtactcgccggagaccattcgaatctggtactttgctgaggtcataatccagccgatcgtccattggtggttcgcaaagcgtttcttacatcctgatatagttgatcaatatagttgcattcttctacgggatgaggaccttggagttgacaatttcaatcctcaacggtatgtgtccattgttcgaaaggaagggcttgaaatatcacaaccggcacttgattttttcaagacagaggtgaactacatggagaaactttcgaaagaggaggcgattcagaagaaactcagcaaggatattttgcaatataaagctcatataatcaagatatttgaggaacataggcacaattggatctctgcatatttagagttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

165

Amino Acids

19.28

Weight (kDa)

6.07

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 38, 95, 111
AclWI GGATC 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 13, 122, 149
AgsI TTSAA 3 cut(s) 277, 320, 349
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 3 cut(s) 21, 89, 125
AlwI GGATC 1 cut(s) 482
AoxI GGCC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 44, 256
AsuHPI GGTGA 2 cut(s) 27, 370
AsuII TTCGAA 3 cut(s) 139, 304, 380
AvaII GGWCC 1 cut(s) 256
BbvCI CCTCAGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 21, 89, 125
BfaI CTAG 1 cut(s) 9
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 44, 256
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 3 cut(s) 139, 304, 380
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 331
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 208, 256
BseMII CTCAG 2 cut(s) 147, 421
BseRI GAGGAG 1 cut(s) 401
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 177
BsiSI CCGG 2 cut(s) 128, 332
BsmAI GTCTC 3 cut(s) 21, 89, 125
BsmBI CGTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 3 cut(s) 139, 304, 380
Bsp143I GATC 4 cut(s) 100, 174, 223, 474
BspACI CCGC 3 cut(s) 38, 95, 111
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 148, 420
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 3 cut(s) 139, 304, 380
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 100, 174, 223, 474
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 3 cut(s) 139, 304, 380
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 156, 407
BstF5I GGATG 2 cut(s) 208, 256
BstKTI GATC 4 cut(s) 103, 177, 226, 477
BstMAI GTCTC 3 cut(s) 21, 89, 125
BstMBI GATC 4 cut(s) 100, 174, 223, 474
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 208, 256
Cac8I GCNNGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 44, 256
Csp6I GTAC 3 cut(s) 12, 121, 148
CviAII CATG 1 cut(s) 367
CviJI RGCY 5 cut(s) 46, 62, 172, 316, 434
CviKI_1 RGCY 5 cut(s) 46, 62, 172, 316, 434
CviQI GTAC 3 cut(s) 12, 121, 148
DdeI CTNAG 2 cut(s) 156, 407
DpnI GATC 4 cut(s) 102, 176, 225, 476
DpnII GATC 4 cut(s) 100, 174, 223, 474
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 1 cut(s) 370
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 366
FbaI TGATCA 1 cut(s) 223
FokI GGATG 2 cut(s) 195, 263
FspBI CTAG 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 128, 332
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 370
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 54, 141, 394
HpaII CCGG 2 cut(s) 128, 332
HphI GGTGA 2 cut(s) 27, 370
Hpy166II GTNNAC 2 cut(s) 268, 361
Hpy188I TCNGA 2 cut(s) 21, 399
Hpy188III TCNNGA 3 cut(s) 212, 349, 445
Hpy8I GTNNAC 2 cut(s) 268, 361
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 4 cut(s) 29, 237, 424, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 156, 407
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 4 cut(s) 100, 174, 223, 474
LpnPI CCDG 9 cut(s) 26, 44, 71, 99, 130, 141, 182, 225, 345
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 33
MalI GATC 4 cut(s) 102, 176, 225, 476
MboI GATC 4 cut(s) 100, 174, 223, 474
MboII GAAGA 3 cut(s) 83, 233, 412
MfeI CAATTG 1 cut(s) 469
MflI RGATCY 1 cut(s) 474
MluCI AATT 2 cut(s) 271, 469
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 34, 70, 151, 247, 291, 349, 379, 382, 448
MspA1I CMGCKG 2 cut(s) 40, 113
MspI CCGG 2 cut(s) 128, 332
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 4 cut(s) 100, 174, 223, 474
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 33
NspV TTCGAA 3 cut(s) 139, 304, 380
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 141, 394
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 44, 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 474
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 3 cut(s) 13, 122, 149
RsaNI GTAC 3 cut(s) 12, 121, 148
Sau3AI GATC 4 cut(s) 100, 174, 223, 474
Sau96I GGNCC 2 cut(s) 44, 256
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 59
SetI ASST 6 cut(s) 17, 26, 162, 261, 360, 436
SfuI TTCGAA 3 cut(s) 139, 304, 380
SinI GGWCC 1 cut(s) 256
Sse9I AATT 2 cut(s) 271, 469
SsiI CCGC 3 cut(s) 38, 95, 111
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 139, 304, 380
TasI AATT 2 cut(s) 271, 469
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 2 cut(s) 141, 394
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 256
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.