Rmu_sc0002202.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
Physical Location & Seq
Forward (+)
7299 .. 8154
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000003.1.cds

Sequence Viewer

Length: 453 bp
atgttacttacactattcattctgtgcagagtatacttctgggatggaaggcggtatggagcgcaggtatccagacaggatttaaaagacatgatcatggatgaaccgatagcaagcaattgcatcgaatgttatgggattctcttgactgatcaactattggagaaagaatcacaaggcttggatgccccatcttttatgaatcccatatgctggattgaaatggtagagctttggatgacagcagtcaaacaacaagcagatgacatgctagaacaaggatgcagaatgaaatttgatgaaaagaacagttcaaaagaacaactgaaaatgatggaagttccattgactgaaacagagaaagaaagcataaggtggatcaaggataactataaacaaaaaatggcagtgacagaaatgaaagacaaccctcagcaaggagaagattcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.62

Weight (kDa)

4.6

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 213
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 213, 437
AgsI TTSAA 2 cut(s) 221, 315
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 293
AspLEI GCGC 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 432
BccI CCATC 3 cut(s) 38, 199, 328
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciVI GTATCC 1 cut(s) 79
BclI TGATCA 2 cut(s) 93, 151
BfaI CTAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 79
BmsI GCATC 3 cut(s) 132, 175, 272
BoxI GACNNNNGTC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 437
BseGI GGATG 5 cut(s) 49, 106, 190, 243, 287
BseLI CCNNNNNNNGG 2 cut(s) 213, 437
BseMII CTCAG 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 213, 437
Bsp143I GATC 3 cut(s) 93, 151, 378
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 386
BssMI GATC 3 cut(s) 93, 151, 378
BssNAI GTATAC 1 cut(s) 34
Bst1107I GTATAC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 5 cut(s) 49, 106, 190, 243, 287
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 3 cut(s) 96, 154, 381
BstMBI GATC 3 cut(s) 93, 151, 378
BstNSI RCATGY 1 cut(s) 271
BstPAI GACNNNNGTC 1 cut(s) 245
BstZ17I GTATAC 1 cut(s) 34
BsuI GTATCC 1 cut(s) 79
BtsCI GGATG 5 cut(s) 49, 106, 190, 243, 287
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 64
CviAII CATG 3 cut(s) 91, 97, 268
CviJI RGCY 2 cut(s) 180, 232
CviKI_1 RGCY 2 cut(s) 180, 232
DdeI CTNAG 1 cut(s) 432
DpnI GATC 3 cut(s) 95, 153, 380
DpnII GATC 3 cut(s) 93, 151, 378
DraI TTTAAA 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 435
FaeI CATG 3 cut(s) 94, 100, 271
FatI CATG 3 cut(s) 90, 96, 267
FauNDI CATATG 1 cut(s) 209
FbaI TGATCA 2 cut(s) 93, 151
FblI GTMKAC 1 cut(s) 33
FokI GGATG 5 cut(s) 56, 113, 197, 250, 294
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 64
Hin1II CATG 3 cut(s) 94, 100, 271
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 4 cut(s) 139, 170, 202, 446
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 72, 145
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 27, 123, 285
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 3 cut(s) 94, 100, 271
HspAI GCGC 1 cut(s) 62
Ksp22I TGATCA 2 cut(s) 93, 151
Kzo9I GATC 3 cut(s) 93, 151, 378
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 5 cut(s) 25, 50, 62, 85, 199
LweI GCATC 3 cut(s) 132, 175, 272
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 3, 409
MalI GATC 3 cut(s) 95, 153, 380
MboI GATC 3 cut(s) 93, 151, 378
MfeI CAATTG 1 cut(s) 118
MluCI AATT 2 cut(s) 118, 293
MnlI CCTC 1 cut(s) 441
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 95
MunI CAATTG 1 cut(s) 118
NdeI CATATG 1 cut(s) 209
NdeII GATC 3 cut(s) 93, 151, 378
NlaIII CATG 3 cut(s) 94, 100, 271
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 271
PfeI GAWTC 4 cut(s) 139, 170, 202, 446
PflMI CCANNNNNTGG 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 83
Sau3AI GATC 3 cut(s) 93, 151, 378
SetI ASST 3 cut(s) 69, 234, 377
SfaNI GCATC 3 cut(s) 132, 175, 272
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 2 cut(s) 118, 293
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 118, 293
TfiI GAWTC 4 cut(s) 139, 170, 202, 446
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 6 cut(s) 7, 117, 215, 305, 315, 434
TspRI CASTG 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 435
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.