Rroxscaffold_6G00411690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000274
Physical Location & Seq
Forward (+)
34301181 .. 34303111
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411690.1

Sequence Viewer

Length: 324 bp
ATGGAGAAAATTTCGAAAAAAGAGAGGGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCGAATCCGAAGAAGAACAATCAAGAACAAAGTCCGGAAGAAACAATTGGCGAAAAGTTGAAACCGATAAAATGGAAGAAAGTAAAAGAGGGAAAAAAGCAAAAGCAGAAAACCGAAGATGAAGAAGAATCAAGTGAATATGAGGAAGGAACAACCGAAGATGAAGAAGAATCGATGAAGAACAAGTCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.56

Weight (kDa)

6.35

Isoelectric Point (pI)

65.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 163
AcsI RAATTY 2 cut(s) 9, 61
AgsI TTSAA 2 cut(s) 61, 190
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 3 cut(s) 40, 71, 108
AluI AGCT 3 cut(s) 40, 71, 108
Alw21I GWGCWC 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 163
ApoI RAATTY 2 cut(s) 9, 61
AsuC2I CCSGG 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 14
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 302
BseGI GGATG 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 164, 318
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 73
Bsp13I TCCGGA 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 302
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 14
BstF5I GGATG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 302
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 302
CviAII CATG 2 cut(s) 74, 122
CviJI RGCY 3 cut(s) 40, 71, 108
CviKI_1 RGCY 3 cut(s) 40, 71, 108
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 2 cut(s) 77, 125
FaiI YATR 3 cut(s) 75, 123, 270
FatI CATG 2 cut(s) 73, 121
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 73
HapII CCGG 2 cut(s) 164, 318
Hin1II CATG 2 cut(s) 77, 125
HinfI GANTC 4 cut(s) 128, 133, 257, 299
HpaII CCGG 2 cut(s) 164, 318
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 152, 164
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 92
Hsp92II CATG 2 cut(s) 77, 125
Kpn2I TCCGGA 1 cut(s) 163
LpnPI CCDG 2 cut(s) 94, 177
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 9, 61, 174
MnlI CCTC 3 cut(s) 18, 211, 265
MroI TCCGGA 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 2 cut(s) 164, 318
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 174
NciI CCSGG 1 cut(s) 319
NlaIII CATG 2 cut(s) 77, 125
NlaIV GGNNCC 1 cut(s) 30
NspV TTCGAA 1 cut(s) 14
PfeI GAWTC 4 cut(s) 128, 133, 257, 299
Psp124BI GAGCTC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 73
SetI ASST 3 cut(s) 42, 73, 110
SfuI TTCGAA 1 cut(s) 14
SgeI CNNG 6 cut(s) 86, 121, 134, 164, 176, 273
Sse9I AATT 3 cut(s) 9, 61, 174
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 317
TaqI TCGA 3 cut(s) 14, 131, 302
TasI AATT 3 cut(s) 9, 61, 174
TfiI GAWTC 4 cut(s) 128, 133, 257, 299
TspDTI ATGAA 4 cut(s) 138, 264, 306, 320
XapI RAATTY 2 cut(s) 9, 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.