Rroxscaffold_1G00015970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000274
Physical Location & Seq
Forward (+)
19878011 .. 19881470
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015970.1

Sequence Viewer

Length: 678 bp
ATGTTACTTACACTATTCATTCTTTGCGAGTATACTTCGGGATGGAAGACAAGATGGGGCACAGGTTTCAAGACAGATTTAAGAGACATGATCATGGATGAACCGATAGCAAGCAATTGCATCGAATGTTATGGAATTCTCTTGATCGATCGTACCGTTGGAGAAACAATCTCAAGACTTGGATGTCCCAACTTTTATGAATCCCTTATGCTGGTCACCGGCTATGATCATGTAATCGGTCATGTAACCGTGCATGTCACCGTTTATGTCACCGGCTATGATCTTGTAACCGGCCATGTAACCGTGCATGTCACCGGTCATGAACTCGAAGATGAAGAAGAATCTAATGAAGAACAAGTCTGCAGTAAGAAGAAGAATAAGGATAAAAAGGAGAAAACTAAAAAGGAGAAAAGAAGAAACAGCGAAGAAACCGAAGATGAAGAAGAAGTTCGTGCAAAGAAGAAGAAGAAAATGGATAAAAGGAAGACAAAAAAAGAGAGTGCAAAGAAGAAGGAAGAAACCGACGAGGAAGAAGATACAAAAGATGATGAAGAGGAAAAAGTCCCAGCGAAGAGAAAAAGATATGTAAAAGAGGGTTATGTGCAGTATCGCTGCACAATGCTTGCTTTTCGAAAACAATTGCAGAAAACAAAAATAACTCGATCGAAGGGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

26.3

Weight (kDa)

8.08

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 211
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 78
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 1 cut(s) 135
AsiGI ACCGGT 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 447
AsuHPI GGTGA 4 cut(s) 208, 250, 262, 304
AsuII TTCGAA 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 62
BbsI GAAGAC 2 cut(s) 53, 491
BbvI GCAGC 1 cut(s) 599
BccI CCATC 2 cut(s) 36, 48
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BclI TGATCA 2 cut(s) 90, 226
BcoDI GTCTC 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 361
BisI GCNGC 1 cut(s) 613
BlsI GCNGC 1 cut(s) 614
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 2 cut(s) 53, 491
Bpu14I TTCGAA 1 cut(s) 631
BpuEI CTTGAG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 4 cut(s) 218, 272, 290, 314
BseCI ATCGAT 1 cut(s) 147
BseGI GGATG 3 cut(s) 47, 103, 188
BseLI CCNNNNNNNGG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 2 cut(s) 598, 623
Bsh1285I CGRYCG 2 cut(s) 151, 665
BshFI GGCC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 2 cut(s) 151, 665
BsiSI CCGG 4 cut(s) 219, 273, 291, 315
BslFI GGGAC 2 cut(s) 171, 548
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 171, 548
BsnI GGCC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 631
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 6 cut(s) 90, 144, 148, 226, 280, 662
BspANI GGCC 1 cut(s) 294
BspDI ATCGAT 1 cut(s) 147
BspHI TCATGA 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 631
BsrFI RCCGGY 4 cut(s) 218, 272, 290, 314
BssAI RCCGGY 4 cut(s) 218, 272, 290, 314
BssMI GATC 6 cut(s) 90, 144, 148, 226, 280, 662
BssNAI GTATAC 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 33
Bst4CI ACNGT 4 cut(s) 157, 250, 262, 304
Bst6I CTCTTC 2 cut(s) 546, 566
BstBI TTCGAA 1 cut(s) 631
BstC8I GCNNGC 2 cut(s) 112, 624
BstEII GGTNACC 1 cut(s) 214
BstF5I GGATG 3 cut(s) 47, 103, 188
BstKTI GATC 6 cut(s) 93, 147, 151, 229, 283, 665
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 6 cut(s) 90, 144, 148, 226, 280, 662
BstMCI CGRYCG 2 cut(s) 151, 665
BstNSI RCATGY 2 cut(s) 257, 311
BstPI GGTNACC 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 2 cut(s) 53, 491
BstZ17I GTATAC 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 3 cut(s) 47, 103, 188
Cac8I GCNNGC 2 cut(s) 112, 624
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 4 cut(s) 218, 272, 290, 314
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 8 cut(s) 88, 94, 230, 242, 254, 296, 308, 320
CviJI RGCY 3 cut(s) 222, 276, 294
CviKI_1 RGCY 3 cut(s) 222, 276, 294
CviQI GTAC 1 cut(s) 153
DpnI GATC 6 cut(s) 92, 146, 150, 228, 282, 664
DpnII GATC 6 cut(s) 90, 144, 148, 226, 280, 662
DrdI GACNNNNNNGTC 1 cut(s) 183
DseDI GACNNNNNNGTC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 546, 566
EarI CTCTTC 2 cut(s) 546, 566
Eco91I GGTNACC 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 135
FaeI CATG 8 cut(s) 91, 97, 233, 245, 257, 299, 311, 323
FaqI GGGAC 2 cut(s) 171, 548
FatI CATG 8 cut(s) 87, 93, 229, 241, 253, 295, 307, 319
FbaI TGATCA 2 cut(s) 90, 226
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 613
FokI GGATG 3 cut(s) 54, 110, 195
Fsp4HI GCNGC 1 cut(s) 613
GluI GCNGC 1 cut(s) 613
GsaI CCCAGC 1 cut(s) 569
HaeIII GGCC 1 cut(s) 294
HapII CCGG 4 cut(s) 219, 273, 291, 315
Hin1II CATG 8 cut(s) 91, 97, 233, 245, 257, 299, 311, 323
HinfI GANTC 2 cut(s) 200, 341
HpaII CCGG 4 cut(s) 219, 273, 291, 315
HphI GGTGA 4 cut(s) 208, 250, 262, 304
Hpy166II GTNNAC 1 cut(s) 33
Hpy188III TCNNGA 5 cut(s) 39, 70, 142, 174, 320
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 2 cut(s) 505, 661
HpyCH4III ACNGT 4 cut(s) 157, 250, 262, 304
HpyCH4V TGCA 9 cut(s) 120, 253, 307, 363, 455, 503, 604, 615, 643
Hsp92II CATG 8 cut(s) 91, 97, 233, 245, 257, 299, 311, 323
Ksp22I TGATCA 2 cut(s) 90, 226
Kzo9I GATC 6 cut(s) 90, 144, 148, 226, 280, 662
LpnPI CCDG 7 cut(s) 48, 197, 232, 286, 304, 328, 579
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 1 cut(s) 129
MaeIII GTNAC 8 cut(s) 3, 214, 244, 256, 268, 286, 298, 310
MalI GATC 6 cut(s) 92, 146, 150, 228, 282, 664
MboI GATC 6 cut(s) 90, 144, 148, 226, 280, 662
MfeI CAATTG 2 cut(s) 115, 638
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 3 cut(s) 115, 135, 638
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 520, 547, 586
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 4 cut(s) 219, 273, 291, 315
MunI CAATTG 2 cut(s) 115, 638
NdeII GATC 6 cut(s) 90, 144, 148, 226, 280, 662
NlaIII CATG 8 cut(s) 91, 97, 233, 245, 257, 299, 311, 323
NmuCI GTSAC 4 cut(s) 214, 256, 268, 310
NspI RCATGY 2 cut(s) 257, 311
NspV TTCGAA 1 cut(s) 631
PagI TCATGA 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 200, 341
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 1 cut(s) 614
Ple19I CGATCG 2 cut(s) 151, 665
PspEI GGTNACC 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 565
PstI CTGCAG 1 cut(s) 365
PvuI CGATCG 2 cut(s) 151, 665
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 1 cut(s) 613
Sau3AI GATC 6 cut(s) 90, 144, 148, 226, 280, 662
SduI GDGCHC 1 cut(s) 62
SetI ASST 1 cut(s) 67
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 3 cut(s) 115, 135, 638
TaaI ACNGT 4 cut(s) 157, 250, 262, 304
TaqI TCGA 6 cut(s) 123, 147, 327, 631, 661, 665
TaqII GACCGA 1 cut(s) 227
TasI AATT 3 cut(s) 115, 135, 638
TfiI GAWTC 2 cut(s) 200, 341
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseFI GTSAC 4 cut(s) 214, 256, 268, 310
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 4 cut(s) 214, 256, 268, 310
TspDTI ATGAA 8 cut(s) 7, 114, 213, 336, 348, 363, 453, 564
XapI RAATTY 1 cut(s) 135
XceI RCATGY 2 cut(s) 257, 311
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.