RLG00000029539

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000274
Physical Location & Seq
Reverse (-)
40077120 .. 40080933
3814 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029539

Sequence Viewer

Length: 633 bp
ATGGAGAAAGACCAGGACGACAACCGAGATCGCAGAAGGACACACAATAGCTGTTTTGGGGCAAAAACGGCTGCGTTGGCGGAGGAAGAGCGTCGAACTGGCAGAGAGAGAGAGCACCGGCTGAGAACCCGAACCCTCTCTGATCAGCAAGGCCCGACTGGACCTGCAACTCTAAGCTTGGAGAAGGCGAACACCCTCAGATCGGTGATTGTCGGAGTTGAACTCAGAGCGATTGTAGTTGGTGTTGTAGCCGCTGGAGGCCACGGGCTCGACTTTGGAAGGCGCGGAAAAAACAACACCTGGATCGGTTCGTCGTCGTCTCTCCTCTCACCGAGACCGACCTTCCTTGACTTCTCTGACTTGCCGCCCTTCGCCATCAATCTCTCCTTCGAACGGATCCTTGCCTCCCGCGACTCCGTCGCCGATCAGACCAACCTCATTGATCTCTCCCTGCAGTTGGGATCGGTGCTCCTTAAGGCCGGTAAGCGCTCAGCGAGACGACGAGACTCCAAGCACAACTCCGTCGCTTGGGCTCTCCCTCTCGACCTCACCATCAAGGACTGCGATGAGGAAATTGGCAACAGTTTTGTGAATTTGGAGTCTGAATACTATAGTGTTTGCTGTGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

211

Amino Acids

23.24

Weight (kDa)

7.67

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccII CGCG 2 cut(s) 285, 411
AciI CCGC 5 cut(s) 80, 252, 285, 365, 409
AclWI GGATC 4 cut(s) 311, 391, 404, 469
AcsI RAATTY 1 cut(s) 592
AfeI AGCGCT 1 cut(s) 488
AfiI CCNNNNNNNGG 4 cut(s) 202, 393, 457, 528
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 2 cut(s) 12, 299
AluBI AGCT 2 cut(s) 51, 177
AluI AGCT 2 cut(s) 51, 177
Alw21I GWGCWC 2 cut(s) 117, 471
Alw26I GTCTC 4 cut(s) 324, 328, 490, 498
AlwI GGATC 4 cut(s) 311, 391, 404, 469
Aor51HI AGCGCT 1 cut(s) 488
AoxI GGCC 3 cut(s) 151, 259, 477
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 592
AspLEI GCGC 2 cut(s) 285, 489
AspS9I GGNCC 2 cut(s) 152, 161
AsuHPI GGTGA 3 cut(s) 217, 321, 541
AsuII TTCGAA 1 cut(s) 390
AvaII GGWCC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 396
BanII GRGCYC 2 cut(s) 270, 535
Bbv12I GWGCWC 2 cut(s) 117, 471
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 383, 560
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 2 cut(s) 14, 301
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 4 cut(s) 324, 328, 490, 498
BfmI CTRYAG 2 cut(s) 452, 610
BfoI RGCGCY 1 cut(s) 490
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 3 cut(s) 72, 252, 365
BlpI GCTNAGC 1 cut(s) 490
BlsI GCNGC 3 cut(s) 73, 253, 366
Bme1390I CCNGG 2 cut(s) 14, 301
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 152, 161
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 14, 301
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 490
Bpu14I TTCGAA 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 393, 457, 528
Bse118I RCCGGY 2 cut(s) 117, 479
Bse1I ACTGG 2 cut(s) 103, 163
BseBI CCWGG 2 cut(s) 14, 301
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 4 cut(s) 202, 393, 457, 528
BseMII CTCAG 4 cut(s) 113, 211, 238, 504
BseNI ACTGG 2 cut(s) 103, 163
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 285, 411
BshFI GGCC 3 cut(s) 153, 261, 479
BsiHKAI GWGCWC 2 cut(s) 117, 471
BsiSI CCGG 2 cut(s) 118, 480
BslI CCNNNNNNNGG 4 cut(s) 202, 393, 457, 528
BsmAI GTCTC 4 cut(s) 324, 328, 490, 498
BsmBI CGTCTC 2 cut(s) 324, 490
BsnI GGCC 3 cut(s) 153, 261, 479
Bso31I GGTCTC 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 4 cut(s) 117, 270, 471, 535
Bsp143I GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
Bsp1720I GCTNAGC 1 cut(s) 490
BspACI CCGC 5 cut(s) 80, 252, 285, 365, 409
BspANI GGCC 3 cut(s) 153, 261, 479
BspCNI CTCAG 4 cut(s) 114, 210, 237, 503
BspFNI CGCG 2 cut(s) 285, 411
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 456
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 4 cut(s) 311, 391, 404, 469
BspQI GCTCTTC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 328
BsrFI RCCGGY 2 cut(s) 117, 479
BsrI ACTGG 2 cut(s) 103, 163
BssAI RCCGGY 2 cut(s) 117, 479
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
Bst2UI CCWGG 2 cut(s) 14, 301
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 390
BstDEI CTNAG 5 cut(s) 122, 173, 197, 224, 490
BstDSI CCRYGG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 285, 411
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 2 cut(s) 285, 489
BstKTI GATC 8 cut(s) 31, 145, 203, 306, 399, 427, 445, 464
BstMAI GTCTC 4 cut(s) 324, 328, 490, 498
BstMBI GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstNI CCWGG 2 cut(s) 14, 301
BstSCI CCNGG 2 cut(s) 12, 299
BstSFI CTRYAG 2 cut(s) 452, 610
BstUI CGCG 2 cut(s) 285, 411
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 3 cut(s) 153, 261, 479
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 172
CfoI GCGC 2 cut(s) 285, 489
Cfr10I RCCGGY 2 cut(s) 117, 479
Cfr13I GGNCC 2 cut(s) 152, 161
CseI GACGC 1 cut(s) 80
DdeI CTNAG 5 cut(s) 122, 173, 197, 224, 490
DpnI GATC 8 cut(s) 30, 144, 202, 305, 398, 426, 444, 463
DpnII GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 95
Eco24I GRGCYC 2 cut(s) 270, 535
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 161
Eco47III AGCGCT 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 12, 299
EcoT38I GRGCYC 2 cut(s) 270, 535
Esp3I CGTCTC 2 cut(s) 324, 490
FaiI YATR 1 cut(s) 612
FauI CCCGC 1 cut(s) 416
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 72, 252, 365
FriOI GRGCYC 2 cut(s) 270, 535
Fsp4HI GCNGC 3 cut(s) 72, 252, 365
GlaI GCGC 2 cut(s) 284, 488
GluI GCNGC 3 cut(s) 72, 252, 365
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 3 cut(s) 153, 261, 479
HapII CCGG 2 cut(s) 118, 480
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 285, 489
Hin6I GCGC 2 cut(s) 283, 487
HinP1I GCGC 2 cut(s) 283, 487
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 3 cut(s) 413, 506, 599
HpaII CCGG 2 cut(s) 118, 480
HphI GGTGA 3 cut(s) 217, 321, 541
Hpy188I TCNGA 7 cut(s) 142, 200, 215, 227, 358, 429, 604
Hpy188III TCNNGA 1 cut(s) 542
Hpy99I CGWCG 6 cut(s) 96, 316, 319, 422, 504, 527
HpyAV CCTTC 6 cut(s) 30, 178, 273, 352, 379, 397
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4V TGCA 2 cut(s) 167, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpyF3I CTNAG 5 cut(s) 122, 173, 197, 224, 490
HspAI GCGC 2 cut(s) 283, 487
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 58
MalI GATC 8 cut(s) 30, 144, 202, 305, 398, 426, 444, 463
MboI GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 4 cut(s) 117, 270, 471, 535
MluCI AATT 2 cut(s) 573, 592
MlyI GAGTC 3 cut(s) 407, 500, 608
MmeI TCCRAC 1 cut(s) 193
MseI TTAA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 2 cut(s) 118, 480
MspR9I CCNGG 2 cut(s) 14, 301
MvaI CCWGG 2 cut(s) 14, 301
MvnI CGCG 2 cut(s) 285, 411
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NdeII GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
NlaIV GGNNCC 1 cut(s) 398
NspV TTCGAA 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 81
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 73, 253, 366
PleI GAGTC 3 cut(s) 407, 500, 607
PpsI GAGTC 3 cut(s) 407, 500, 607
Psp6I CCWGG 2 cut(s) 12, 299
PspGI CCWGG 2 cut(s) 12, 299
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 152, 161
PstI CTGCAG 1 cut(s) 456
PsuI RGATCY 1 cut(s) 396
PsyI GACNNNGTC 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 3 cut(s) 72, 252, 365
Sau3AI GATC 8 cut(s) 28, 142, 200, 303, 396, 424, 442, 461
Sau96I GGNCC 2 cut(s) 152, 161
SchI GAGTC 3 cut(s) 407, 500, 608
ScrFI CCNGG 2 cut(s) 14, 301
SduI GDGCHC 4 cut(s) 117, 270, 471, 535
SetI ASST 7 cut(s) 53, 166, 179, 302, 344, 438, 549
SfcI CTRYAG 2 cut(s) 452, 610
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 2 cut(s) 573, 592
SsiI CCGC 5 cut(s) 80, 252, 285, 365, 409
StyD4I CCNGG 2 cut(s) 12, 299
TaaI ACNGT 1 cut(s) 584
TaqI TCGA 4 cut(s) 94, 270, 390, 543
TaqII GACCGA 1 cut(s) 352
TasI AATT 2 cut(s) 573, 592
TauI GCSGC 2 cut(s) 254, 367
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseI GCWGC 1 cut(s) 71
TspGWI ACGGA 3 cut(s) 406, 409, 511
Tth111I GACNNNGTC 1 cut(s) 416
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.