Rroxscaffold_5G00366720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000274
Physical Location & Seq
Reverse (-)
48678210 .. 48678938
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366720.1

Sequence Viewer

Length: 546 bp
ATGTTGAAGGATGAATTGCAAAATGAAAGTTCACAAAATTTGGCAAGATCTGCTTTTATGCATACCATGTGTTGGTATTCGACAATACATTTAACGGTGAGAAACCTCCATCAATACTTGTGTGAGCCGCTGTTCCAAAACATGGAAAAATGCAGCATGTTTTTCTTCCCAATTACCCATAATGAAGAATTTCACCACACACTCTTGGTCTTTGACAAGGACATACCACAATGGCTGCATTTTGATTCAATGAAACCAAGAAGAGCAGGAACAGGGGAGTGCTTTAAAAGTATAAAAAAATTGGTTGAAATGGTCGAGCTGTGGATGAGAGCGAGTGAAAGATCAAGCGAGACGATATCTTTGGAGCAAGGTCGCCGAATGAAATTTGACAAGAGTCAAAGCACTCACACAAAATTAAAGATGGTTGAAAGTATTTTGAGCGATGAAGAGATAAAAACAATAAAGTGGATAAAGGAAAATTATGACGGTGGAAGGATCCCTTTGAACCATGCCAAAATCTGCCCCCAACAAGACGAAGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.42

Weight (kDa)

6.75

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 72, 142
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 490, 503
AcsI RAATTY 3 cut(s) 37, 188, 383
AfiI CCNNNNNNNGG 2 cut(s) 72, 142
AgsI TTSAA 5 cut(s) 7, 249, 308, 428, 505
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 490, 503
ApeKI GCWGC 2 cut(s) 153, 235
ApoI RAATTY 3 cut(s) 37, 188, 383
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
Asp700I GAANNNNTTC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 109, 185
BamHI GGATCC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 165, 222
BccI CCATC 2 cut(s) 117, 415
BcoDI GTCTC 1 cut(s) 344
BglII AGATCT 1 cut(s) 47
BisI GCNGC 3 cut(s) 128, 154, 236
BlsI GCNGC 3 cut(s) 129, 155, 237
BmiI GGNNCC 1 cut(s) 497
BoxI GACNNNNGTC 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 142
BseGI GGATG 2 cut(s) 16, 330
BseLI CCNNNNNNNGG 2 cut(s) 72, 142
BseXI GCAGC 2 cut(s) 165, 222
BslI CCNNNNNNNGG 2 cut(s) 72, 142
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
Bsp143I GATC 4 cut(s) 47, 341, 495, 539
BspACI CCGC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 2 cut(s) 490, 503
BspQI GCTCTTC 1 cut(s) 256
BssMI GATC 4 cut(s) 47, 341, 495, 539
Bst4CI ACNGT 2 cut(s) 97, 488
Bst6I CTCTTC 2 cut(s) 256, 441
BstAPI GCANNNNNTGC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 16, 330
BstKTI GATC 4 cut(s) 50, 344, 498, 542
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 4 cut(s) 47, 341, 495, 539
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 165, 222
BstX2I RGATCY 2 cut(s) 47, 495
BstYI RGATCY 2 cut(s) 47, 495
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 16, 330
CviAII CATG 4 cut(s) 67, 142, 157, 509
CviJI RGCY 3 cut(s) 127, 235, 319
CviKI_1 RGCY 3 cut(s) 127, 235, 319
DpnI GATC 4 cut(s) 49, 343, 497, 541
DpnII GATC 4 cut(s) 47, 341, 495, 539
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 256, 441
EarI CTCTTC 2 cut(s) 256, 441
Eco32I GATATC 1 cut(s) 357
EcoRV GATATC 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 4 cut(s) 70, 145, 160, 512
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 484, 516
FatI CATG 4 cut(s) 66, 141, 156, 508
Fnu4HI GCNGC 3 cut(s) 128, 154, 236
FokI GGATG 2 cut(s) 23, 337
Fsp4HI GCNGC 3 cut(s) 128, 154, 236
GluI GCNGC 3 cut(s) 128, 154, 236
Hin1II CATG 4 cut(s) 70, 145, 160, 512
HinfI GANTC 2 cut(s) 245, 394
HphI GGTGA 2 cut(s) 109, 185
Hpy166II GTNNAC 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 486, 530
HpyCH4III ACNGT 2 cut(s) 97, 488
HpyCH4V TGCA 4 cut(s) 19, 61, 153, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 4 cut(s) 70, 145, 160, 512
Kzo9I GATC 4 cut(s) 47, 341, 495, 539
LguI GCTCTTC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 2 cut(s) 252, 258
Lsp1109I GCAGC 2 cut(s) 165, 222
MalI GATC 4 cut(s) 49, 343, 497, 541
MboI GATC 4 cut(s) 47, 341, 495, 539
MboII GAAGA 4 cut(s) 157, 197, 273, 458
MflI RGATCY 2 cut(s) 47, 495
MluCI AATT 8 cut(s) 14, 37, 171, 188, 299, 383, 413, 478
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 92, 285, 416
MspA1I CMGCKG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 4 cut(s) 47, 341, 495, 539
NlaIII CATG 4 cut(s) 70, 145, 160, 512
NlaIV GGNNCC 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 2 cut(s) 72, 142
PkrI GCNGC 3 cut(s) 129, 155, 237
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PshAI GACNNNNGTC 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 497
PsuI RGATCY 2 cut(s) 47, 495
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 92, 285, 416
SatI GCNGC 3 cut(s) 128, 154, 236
Sau3AI GATC 4 cut(s) 47, 341, 495, 539
SchI GAGTC 1 cut(s) 403
SetI ASST 3 cut(s) 108, 321, 373
Sse9I AATT 8 cut(s) 14, 37, 171, 188, 299, 383, 413, 478
SsiI CCGC 1 cut(s) 128
TaaI ACNGT 2 cut(s) 97, 488
TaqI TCGA 2 cut(s) 80, 315
TasI AATT 8 cut(s) 14, 37, 171, 188, 299, 383, 413, 478
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 92, 285, 416
Tru9I TTAA 3 cut(s) 92, 285, 416
TseI GCWGC 2 cut(s) 153, 235
TspDTI ATGAA 6 cut(s) 27, 39, 198, 266, 395, 459
Van91I CCANNNNNTGG 2 cut(s) 72, 142
XapI RAATTY 3 cut(s) 37, 188, 383
XceI RCATGY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.