Rmu_sc0005023.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005023.1
OG0000274
Physical Location & Seq
Reverse (-)
151340 .. 152231
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005023.1_g000028.1.cds

Sequence Viewer

Length: 387 bp
atggtagagctttggattgcagcagtcaaagaccaagcagatgacatgctagaccaaggatgccgaatgaaattcgatgaaaagaacagctcagaagaagaattgaaactgatcgaagttcccctaactgaaaatgagatagaaagcataaaatggatcagggataactataatggaaaaatgaatgtgaaagacgttaaaagctgccctcaacaaggagaagacctctggacaagtgaagtcactgggcaagtcactgttagtgtagctgtccttgtgaagtggccaagtcattgttcatgtagctcgccaagtgaagtcgttggccaagtcactgtcagtgtagctggccatgtgaagtcgctggccaagtcactgtccatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.19

Weight (kDa)

4.78

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 4 cut(s) 284, 325, 349, 366
AcsI RAATTY 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AluBI AGCT 6 cut(s) 10, 90, 204, 269, 306, 347
AluI AGCT 6 cut(s) 10, 90, 204, 269, 306, 347
AlwI GGATC 1 cut(s) 164
AoxI GGCC 4 cut(s) 284, 325, 349, 366
ApeKI GCWGC 2 cut(s) 20, 204
ApoI RAATTY 1 cut(s) 71
BalI TGGCCA 4 cut(s) 286, 327, 351, 368
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 32, 191
BfaI CTAG 1 cut(s) 50
BisI GCNGC 2 cut(s) 21, 205
BlsI GCNGC 2 cut(s) 22, 206
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 32, 191
BshFI GGCC 4 cut(s) 286, 327, 351, 368
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 4 cut(s) 286, 327, 351, 368
Bsp143I GATC 2 cut(s) 111, 156
BspANI GGCC 4 cut(s) 286, 327, 351, 368
BspCNI CTCAG 1 cut(s) 104
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 111, 156
BssT1I CCWWGG 1 cut(s) 55
Bst4CI ACNGT 3 cut(s) 259, 337, 378
BstC8I GCNNGC 3 cut(s) 308, 349, 366
BstDEI CTNAG 1 cut(s) 91
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 2 cut(s) 114, 159
BstMBI GATC 2 cut(s) 111, 156
BstNSI RCATGY 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 32, 191
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 4 cut(s) 286, 327, 351, 368
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 5 cut(s) 243, 255, 333, 346, 374
Cac8I GCNNGC 3 cut(s) 308, 349, 366
CviAII CATG 4 cut(s) 46, 300, 353, 382
DdeI CTNAG 1 cut(s) 91
DpnI GATC 2 cut(s) 113, 158
DpnII GATC 2 cut(s) 111, 156
EaeI YGGCCR 4 cut(s) 284, 325, 349, 366
Eco130I CCWWGG 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 4 cut(s) 49, 303, 356, 385
FaiI YATR 6 cut(s) 47, 149, 171, 301, 354, 383
FatI CATG 4 cut(s) 45, 299, 352, 381
Fnu4HI GCNGC 2 cut(s) 21, 205
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 21, 205
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 21, 205
HaeIII GGCC 4 cut(s) 286, 327, 351, 368
Hin1II CATG 4 cut(s) 49, 303, 356, 385
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 229
HpyCH4III ACNGT 3 cut(s) 259, 337, 378
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 49, 303, 356, 385
Kzo9I GATC 2 cut(s) 111, 156
LpnPI CCDG 5 cut(s) 145, 214, 231, 333, 350
Lsp1109I GCAGC 2 cut(s) 32, 191
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 4 cut(s) 241, 253, 331, 372
MalI GATC 2 cut(s) 113, 158
MboI GATC 2 cut(s) 111, 156
MboII GAAGA 3 cut(s) 107, 110, 233
MlsI TGGCCA 4 cut(s) 286, 327, 351, 368
MluCI AATT 2 cut(s) 71, 101
MluNI TGGCCA 4 cut(s) 286, 327, 351, 368
MnlI CCTC 2 cut(s) 219, 236
Mox20I TGGCCA 4 cut(s) 286, 327, 351, 368
MscI TGGCCA 4 cut(s) 286, 327, 351, 368
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 4 cut(s) 286, 327, 351, 368
NdeII GATC 2 cut(s) 111, 156
NlaIII CATG 4 cut(s) 49, 303, 356, 385
NmuCI GTSAC 4 cut(s) 241, 253, 331, 372
NspI RCATGY 1 cut(s) 49
PkrI GCNGC 2 cut(s) 22, 206
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 21, 205
Sau3AI GATC 2 cut(s) 111, 156
SetI ASST 8 cut(s) 12, 92, 198, 206, 228, 271, 308, 349
SfaNI GCATC 1 cut(s) 50
Sse9I AATT 2 cut(s) 71, 101
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 259, 337, 378
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 75, 114
TasI AATT 2 cut(s) 71, 101
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 5 cut(s) 250, 262, 340, 346, 381
TseFI GTSAC 4 cut(s) 241, 253, 331, 372
TseI GCWGC 2 cut(s) 20, 204
Tsp45I GTSAC 4 cut(s) 241, 253, 331, 372
TspDTI ATGAA 4 cut(s) 83, 93, 197, 288
TspRI CASTG 5 cut(s) 250, 262, 340, 346, 381
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 49
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.