RchiOBHm_Chr4g0402241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000274
Physical Location & Seq
Reverse (-)
20770634 .. 20771550
917 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37406

Sequence Viewer

Length: 402 bp
ATGGTTGAAATGGTAGAGCTTTGGATGACAGCAGTCAAAGAACAAGCAGATGACATGCTAGGACAAGGTTGCAGGATGAAATTTGATGAAAAGAACAGTTCAGAAGAAACACTGAAAATGATGGAAGTTCCATTGACTGAAACAGAGAGAGAAAGCATAAAGTGGATCAAGGATAACTATAAACGAAAAATGGCAGTGACAGAAATCAAAGACAACCCTCAGCAAGGAGAAGATTCATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGCAAAAAGGGACAGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCAGGTGGTAAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAAAACATAATGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.53

Weight (kDa)

5.5

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 3 cut(s) 80, 276, 328
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 8, 328
AluBI AGCT 4 cut(s) 19, 307, 338, 375
AluI AGCT 4 cut(s) 19, 307, 338, 375
Alw21I GWGCWC 1 cut(s) 340
AlwI GGATC 1 cut(s) 173
ApoI RAATTY 3 cut(s) 80, 276, 328
BanII GRGCYC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 115
BfaI CTAG 1 cut(s) 59
BoxI GACNNNNGTC 1 cut(s) 32
Bpu10I CCTNAGC 2 cut(s) 219, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 224
BseGI GGATG 3 cut(s) 30, 81, 322
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 233, 353
BsiHKAI GWGCWC 1 cut(s) 340
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 2 cut(s) 232, 352
BspPI GGATC 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 261
BssMI GATC 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 98, 295
BstAUI TGTACA 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 219, 339
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 30, 81, 322
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 58
BstPAI GACNNNNGTC 1 cut(s) 32
BtsCI GGATG 3 cut(s) 30, 81, 322
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 110, 201
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 19, 307, 338, 375
CviKI_1 RGCY 4 cut(s) 19, 307, 338, 375
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 219, 339
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 338
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 158, 180, 390
FaqI GGGAC 1 cut(s) 304
FatI CATG 1 cut(s) 54
FokI GGATG 3 cut(s) 37, 88, 329
FriOI GRGCYC 1 cut(s) 340
FspBI CTAG 1 cut(s) 59
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4III ACNGT 2 cut(s) 98, 295
HpyCH4V TGCA 2 cut(s) 72, 359
HpyF3I CTNAG 2 cut(s) 219, 339
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 3 cut(s) 58, 326, 361
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 116, 242
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 80, 276, 328
MnlI CCTC 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 375
NdeII GATC 1 cut(s) 165
NlaIII CATG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 58
PfeI GAWTC 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 340
Sau3AI GATC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 340
SetI ASST 6 cut(s) 21, 70, 309, 340, 345, 377
SgeI CNNG 9 cut(s) 56, 67, 71, 77, 85, 181, 236, 353, 388
Sse9I AATT 3 cut(s) 80, 276, 328
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 340
TaaI ACNGT 2 cut(s) 98, 295
TasI AATT 3 cut(s) 80, 276, 328
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 2 cut(s) 117, 201
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 92, 102, 225
TspRI CASTG 2 cut(s) 117, 201
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 3 cut(s) 80, 276, 328
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.