Rmu_sc0002202.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000274
Physical Location & Seq
Forward (+)
13449 .. 14375
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000006.1.cds

Sequence Viewer

Length: 438 bp
atgttatgcatggtattattctgggagggaaaagaggctggaagcgaaatcacaagggcggatgtcaaaatgttcatcagcgatcaatcaatagcaaacaactggattgattgctatggggaagtgttgaaggatgaactgcaaaacgaaagttcacaaggtttgggaagatccgcttttatgcatagcatgtgttgggttgaaatggtcgagctgtggatgagagcaatcaaagatcaagcagatgatatgctggagcaaggctgccgagtgcaatttgacaagagtcaaagcactcacacaaaattaaagatggttgaaagtattttgagcgatgacgagataagaacaataaggtggataaaggaaaattatgacggtggaaggatccctttgaacgatgccagaatctgcccccaacaagacgaaggatcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.73

Weight (kDa)

4.62

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 174
AclWI GGATC 3 cut(s) 165, 382, 395
AgsI TTSAA 4 cut(s) 130, 203, 320, 397
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AlwI GGATC 3 cut(s) 165, 382, 395
AlwNI CAGNNNCTG 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 264
BamHI GGATCC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 307
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 389
BmsI GCATC 1 cut(s) 391
BoxI GACNNNNGTC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 107
BseGI GGATG 3 cut(s) 67, 139, 225
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 251
Bsp143I GATC 5 cut(s) 82, 170, 235, 387, 431
BspACI CCGC 2 cut(s) 59, 174
BspLI GGNNCC 1 cut(s) 389
BspPI GGATC 3 cut(s) 165, 382, 395
BsrI ACTGG 1 cut(s) 107
BssMI GATC 5 cut(s) 82, 170, 235, 387, 431
Bst4CI ACNGT 1 cut(s) 380
BstF5I GGATG 3 cut(s) 67, 139, 225
BstKTI GATC 5 cut(s) 85, 173, 238, 390, 434
BstMBI GATC 5 cut(s) 82, 170, 235, 387, 431
BstNSI RCATGY 1 cut(s) 193
BstPAI GACNNNNGTC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 170, 387
BstYI RGATCY 2 cut(s) 170, 387
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 67, 139, 225
CaiI CAGNNNCTG 1 cut(s) 411
CviAII CATG 2 cut(s) 10, 190
CviJI RGCY 3 cut(s) 38, 214, 264
CviKI_1 RGCY 3 cut(s) 38, 214, 264
DpnI GATC 5 cut(s) 84, 172, 237, 389, 433
DpnII GATC 5 cut(s) 82, 170, 235, 387, 431
EciI GGCGGA 1 cut(s) 74
EcoT22I ATGCAT 2 cut(s) 11, 186
FaeI CATG 2 cut(s) 13, 193
FaiI YATR 8 cut(s) 7, 11, 117, 182, 186, 191, 251, 375
FalI AAGNNNNNCTT 4 cut(s) 160, 192, 376, 408
FatI CATG 2 cut(s) 9, 189
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 3 cut(s) 74, 146, 232
Fsp4HI GCNGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 275
Hin1II CATG 2 cut(s) 13, 193
HinfI GANTC 2 cut(s) 286, 408
Hpy166II GTNNAC 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 124, 378, 422
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 4 cut(s) 9, 142, 184, 274
Hsp92II CATG 2 cut(s) 13, 193
Kzo9I GATC 5 cut(s) 82, 170, 235, 387, 431
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 7, 24, 88, 239, 418
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 391
MalI GATC 5 cut(s) 84, 172, 237, 389, 433
MboI GATC 5 cut(s) 82, 170, 235, 387, 431
MboII GAAGA 1 cut(s) 180
MflI RGATCY 2 cut(s) 170, 387
MluCI AATT 3 cut(s) 275, 305, 370
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 2 cut(s) 19, 28
Mph1103I ATGCAT 2 cut(s) 11, 186
MseI TTAA 1 cut(s) 308
NdeII GATC 5 cut(s) 82, 170, 235, 387, 431
NlaIII CATG 2 cut(s) 13, 193
NlaIV GGNNCC 1 cut(s) 389
NmeAIII GCCGAG 1 cut(s) 293
NsiI ATGCAT 2 cut(s) 11, 186
NspI RCATGY 1 cut(s) 193
PfeI GAWTC 1 cut(s) 408
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 389
PstNI CAGNNNCTG 1 cut(s) 411
PsuI RGATCY 2 cut(s) 170, 387
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 5 cut(s) 82, 170, 235, 387, 431
SchI GAGTC 1 cut(s) 295
SetI ASST 3 cut(s) 163, 216, 359
SfaNI GCATC 1 cut(s) 391
Sse9I AATT 3 cut(s) 275, 305, 370
SsiI CCGC 2 cut(s) 59, 174
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 210
TasI AATT 3 cut(s) 275, 305, 370
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 64, 150
XceI RCATGY 1 cut(s) 193
Zsp2I ATGCAT 2 cut(s) 11, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.