Rmu_co8451743.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8451743.1
OG0000274
Physical Location & Seq
Forward (+)
1 .. 1480
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8451743.1_g000001.1.cds

Sequence Viewer

Length: 407 bp
gtaggcgctatgaagcagaggtatccagacatgatttgaaggacatgaacatgaatgaacctattgcaagcaactgcatagaatgctatgggattctgttgattgatcaactattggacaaagaatcacagggtctggaggtgccatcttttatgaatcccttatgctggattgaaatggtagagctttggatgacagcagtcaaagaccaagcagatgacatgctagaacaaggatgccgaatgaaatttgatgaaaagaacagctcagaagaacaattaaaactgattggagttccactgactgaaactgagatagaaagcataaaatggatcagggataactgtaatggaaaaatgaatgtgcaagacgttaaaagctgccctcaacaaggagaagactcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.48

Weight (kDa)

4.4

Isoelectric Point (pI)

64.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 167, 391
AgsI TTSAA 2 cut(s) 39, 175
AluBI AGCT 3 cut(s) 186, 266, 380
AluI AGCT 3 cut(s) 186, 266, 380
AlwI GGATC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 247
AspLEI GCGC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 153
BciVI GTATCC 1 cut(s) 33
BclI TGATCA 1 cut(s) 105
BfaI CTAG 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 9
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 143
BmsI GCATC 1 cut(s) 226
BoxI GACNNNNGTC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 391
BseGI GGATG 2 cut(s) 197, 241
BseLI CCNNNNNNNGG 2 cut(s) 167, 391
BseMII CTCAG 2 cut(s) 281, 302
BseXI GCAGC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 167, 391
BsmI GAATGC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 105, 332
BspCNI CTCAG 2 cut(s) 280, 303
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 141
BssMI GATC 2 cut(s) 105, 332
Bst4CI ACNGT 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 267, 311
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 2 cut(s) 197, 241
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 108, 335
BstMBI GATC 2 cut(s) 105, 332
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 225
BstPAI GACNNNNGTC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 367
BsuI GTATCC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 197, 241
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 8
CviAII CATG 4 cut(s) 31, 45, 51, 222
CviJI RGCY 3 cut(s) 186, 266, 380
CviKI_1 RGCY 3 cut(s) 186, 266, 380
DdeI CTNAG 2 cut(s) 267, 311
DpnI GATC 2 cut(s) 107, 334
DpnII GATC 2 cut(s) 105, 332
EcoNI CCTNNNNNAGG 1 cut(s) 389
FaeI CATG 4 cut(s) 34, 48, 54, 225
FatI CATG 4 cut(s) 30, 44, 50, 221
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 204, 248
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 226
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 9
HhaI GCGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 34, 48, 54, 225
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 4 cut(s) 93, 124, 156, 400
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 26, 136
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 3 cut(s) 67, 77, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 267, 311
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 4 cut(s) 34, 48, 54, 225
HspAI GCGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 332
LpnPI CCDG 5 cut(s) 39, 115, 121, 153, 321
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 226
MaeII ACGT 1 cut(s) 371
MalI GATC 2 cut(s) 107, 334
MboI GATC 2 cut(s) 105, 332
MboII GAAGA 1 cut(s) 283
MluCI AATT 2 cut(s) 247, 277
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 3 cut(s) 12, 132, 395
MseI TTAA 2 cut(s) 280, 374
MslI CAYNNNNRTG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 105, 332
NlaIII CATG 4 cut(s) 34, 48, 54, 225
NlaIV GGNNCC 1 cut(s) 143
NspI RCATGY 1 cut(s) 225
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 3 cut(s) 93, 124, 156
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 280, 374
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 105, 332
SchI GAGTC 1 cut(s) 394
SetI ASST 7 cut(s) 23, 63, 143, 188, 268, 374, 382
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 2 cut(s) 247, 277
SspMI CTAG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 374
TasI AATT 2 cut(s) 247, 277
TfiI GAWTC 3 cut(s) 93, 124, 156
Tru1I TTAA 2 cut(s) 280, 374
Tru9I TTAA 2 cut(s) 280, 374
TscAI CASTG 1 cut(s) 305
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 8 cut(s) 26, 61, 67, 71, 169, 259, 269, 373
TspRI CASTG 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 225
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.