Rroxscaffold_5G00353990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000274
Physical Location & Seq
Reverse (-)
32176094 .. 32181289
5196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353990.1

Sequence Viewer

Length: 699 bp
ATGCACAAATCAATAAAGAGCCGAACGAAAACAGCTACCTCCGAGGTTGTAGACCGGGAAGCGAGCAAAGTGTACAATTTTATGGACCAGGACACCAAGAGCAGAGTCCGAAATGCGGCAAAATGCACCATCGGGATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAGAGAGGGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCGAGTGCGGAATCCGGGTTATCGGTACCAAAGACCAAAGAAGGGGCATACAGATCTGAGTTCGTGACTAAATACTTTGACAAAAGCGAGAGGATCAACAAGGCGGCTGCAGAGGAAGCTTTGAAGAAGGCATTGGCGAAAACTCCGAAACAGGAGAAGAAAAAACGAAACGGGACAGAAAATGTTGCTATCGGGTTTTGCCACAAGACGGGAGTAGTGCCGCCAATCTCTCGGAAGAGAAACAGAACAACACGGAATAAGAAAGTGGCAATTAAAGACCCCGATAGAAAAAAAGGGGATTTCAACACCATGGGGAAGTTGAAGAAAATATTTGATAAAGTTAAAGAAGATGCAGAGGAAGAAGATTCGAGTCTAATGCGGATACGTAAAGTAAAGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.51

Weight (kDa)

10.0

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 51
AciI CCGC 6 cut(s) 116, 145, 302, 398, 515, 673
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 2 cut(s) 175, 226
AfaI GTAC 3 cut(s) 74, 162, 321
AfiI CCNNNNNNNGG 3 cut(s) 115, 336, 502
AgsI TTSAA 4 cut(s) 226, 418, 598, 616
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 5 cut(s) 35, 205, 236, 273, 413
AluI AGCT 5 cut(s) 35, 205, 236, 273, 413
Alw21I GWGCWC 1 cut(s) 238
AlwI GGATC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 175, 226
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 56, 310
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 2 cut(s) 56, 310
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 1 cut(s) 347
BisI GCNGC 4 cut(s) 117, 399, 402, 515
BlsI GCNGC 4 cut(s) 118, 400, 403, 516
Bme1390I CCNGG 3 cut(s) 56, 89, 310
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 195, 321
BmrFI CCNGG 3 cut(s) 56, 89, 310
BmsI GCATC 1 cut(s) 634
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 56, 310
BsaAI YACGTR 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 42, 603
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 336, 502
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 42, 603
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 3 cut(s) 115, 336, 502
BseMII CTCAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 55, 309
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 115, 336, 502
BsmFI GGGAC 1 cut(s) 481
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 238
Bsp1407I TGTACA 2 cut(s) 72, 160
Bsp143I GATC 2 cut(s) 347, 387
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 6 cut(s) 116, 145, 302, 398, 515, 673
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 195, 321
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 319
BsrGI TGTACA 2 cut(s) 72, 160
BssECI CCNNGG 2 cut(s) 42, 603
BssMI GATC 2 cut(s) 347, 387
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 524
BstAUI TGTACA 2 cut(s) 72, 160
BstBAI YACGTR 1 cut(s) 680
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 350, 390
BstMBI GATC 2 cut(s) 347, 387
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 3 cut(s) 54, 87, 308
BstSFI CTRYAG 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 680
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuI GTATCC 1 cut(s) 669
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 73, 161, 320
CviAII CATG 3 cut(s) 239, 287, 604
CviJI RGCY 7 cut(s) 21, 35, 205, 236, 273, 401, 413
CviKI_1 RGCY 7 cut(s) 21, 35, 205, 236, 273, 401, 413
CviQI GTAC 3 cut(s) 73, 161, 320
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 349, 389
DpnII GATC 2 cut(s) 347, 387
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Ecl136II GAGCTC 1 cut(s) 236
Eco105I TACGTA 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 242, 290, 607
FaiI YATR 5 cut(s) 83, 240, 288, 343, 605
FaqI GGGAC 1 cut(s) 481
FatI CATG 3 cut(s) 238, 286, 603
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 117, 399, 402, 515
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 4 cut(s) 117, 399, 402, 515
GluI GCNGC 4 cut(s) 117, 399, 402, 515
HapII CCGG 2 cut(s) 55, 309
Hin1II CATG 3 cut(s) 242, 290, 607
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 5 cut(s) 105, 293, 305, 659, 664
HpaII CCGG 2 cut(s) 55, 309
Hpy166II GTNNAC 3 cut(s) 52, 73, 163
Hpy188I TCNGA 5 cut(s) 43, 110, 352, 441, 528
Hpy188III TCNNGA 2 cut(s) 133, 358
Hpy8I GTNNAC 3 cut(s) 52, 73, 163
HpyAV CCTTC 2 cut(s) 329, 415
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 5 cut(s) 4, 126, 257, 404, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 3 cut(s) 242, 290, 607
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 2 cut(s) 347, 387
LpnPI CCDG 6 cut(s) 68, 74, 101, 259, 322, 431
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 634
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 349, 389
MboI GATC 2 cut(s) 347, 387
MboII GAAGA 8 cut(s) 302, 430, 463, 541, 628, 653, 665, 668
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 4 cut(s) 76, 175, 226, 564
MlyI GAGTC 2 cut(s) 114, 673
MnlI CCTC 6 cut(s) 37, 49, 183, 378, 400, 643
MseI TTAA 2 cut(s) 567, 636
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 2 cut(s) 55, 309
MspR9I CCNGG 3 cut(s) 56, 89, 310
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 2 cut(s) 56, 310
NcoI CCATGG 1 cut(s) 603
NdeII GATC 2 cut(s) 347, 387
NlaIII CATG 3 cut(s) 242, 290, 607
NlaIV GGNNCC 2 cut(s) 195, 321
NmuCI GTSAC 1 cut(s) 358
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 3 cut(s) 293, 305, 659
PkrI GCNGC 4 cut(s) 118, 400, 403, 516
PleI GAGTC 2 cut(s) 113, 672
PpsI GAGTC 2 cut(s) 113, 672
Ppu21I YACGTR 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 195, 321
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 273
RsaI GTAC 3 cut(s) 74, 162, 321
RsaNI GTAC 3 cut(s) 73, 161, 320
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 567, 636
SatI GCNGC 4 cut(s) 117, 399, 402, 515
Sau3AI GATC 2 cut(s) 347, 387
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 114, 673
ScrFI CCNGG 3 cut(s) 56, 89, 310
SduI GDGCHC 1 cut(s) 238
SetI ASST 8 cut(s) 37, 41, 48, 207, 238, 275, 415, 682
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 85
SnaBI TACGTA 1 cut(s) 680
Sse9I AATT 4 cut(s) 76, 175, 226, 564
SsiI CCGC 6 cut(s) 116, 145, 302, 398, 515, 673
SspI AATATT 1 cut(s) 624
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 3 cut(s) 54, 87, 308
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 1 cut(s) 682
TaqI TCGA 3 cut(s) 180, 296, 662
TasI AATT 4 cut(s) 76, 175, 226, 564
TatI WGTACW 2 cut(s) 72, 160
TauI GCSGC 3 cut(s) 119, 401, 517
TfiI GAWTC 3 cut(s) 293, 305, 659
Tru1I TTAA 2 cut(s) 567, 636
Tru9I TTAA 2 cut(s) 567, 636
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 303
TspGWI ACGGA 1 cut(s) 562
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 175, 226
XmiI GTMKAC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.