Rroxscaffold_3G00259420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000274
Physical Location & Seq
Reverse (-)
53802742 .. 53804889
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259420.1

Sequence Viewer

Length: 339 bp
ATGCCCACAGTGGAGGAAATGGAACAACAAGCCGACATGTTTCGGATAGTGAAAAGTCCTATAGTTGAAGAAGCATTTCCACTTCGTACATTGAGCATAGAGAACGAGAAGAAGACACCGAGAGCGCAGCAAAAAGAGCGAGTTCACAATGCACCTTACACAAAGAACATTCGATTGGATTGCAGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAAGAGAGAGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGTAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.33

Weight (kDa)

9.3

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 213, 265
AfaI GTAC 2 cut(s) 88, 200
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 68, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 3 cut(s) 244, 275, 312
AluI AGCT 3 cut(s) 244, 275, 312
Alw21I GWGCWC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 213, 265
Asp700I GAANNNNTTC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 218
BseGI GGATG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 277
Bsp1407I TGTACA 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 218
BstF5I GGATG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 15
CfoI GCGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 87, 199
CviAII CATG 3 cut(s) 37, 278, 326
CviJI RGCY 4 cut(s) 32, 244, 275, 312
CviKI_1 RGCY 4 cut(s) 32, 244, 275, 312
CviQI GTAC 2 cut(s) 87, 199
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 3 cut(s) 40, 281, 329
FaiI YATR 5 cut(s) 38, 62, 98, 279, 327
FatI CATG 3 cut(s) 36, 277, 325
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 128
GlaI GCGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 127
Hin1II CATG 3 cut(s) 40, 281, 329
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 145, 201
Hpy188I TCNGA 1 cut(s) 45
Hpy8I GTNNAC 2 cut(s) 145, 201
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 152, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 3 cut(s) 40, 281, 329
HspAI GCGC 1 cut(s) 125
LpnPI CCDG 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 139
MboII GAAGA 3 cut(s) 80, 121, 124
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 2 cut(s) 213, 265
MnlI CCTC 1 cut(s) 7
MroXI GAANNNNTTC 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 136
NlaIII CATG 3 cut(s) 40, 281, 329
NspI RCATGY 1 cut(s) 40
NspV TTCGAA 1 cut(s) 218
PciI ACATGT 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 129
PscI ACATGT 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 312
RsaI GTAC 2 cut(s) 88, 200
RsaNI GTAC 2 cut(s) 87, 199
SacI GAGCTC 1 cut(s) 277
SatI GCNGC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 277
SetI ASST 4 cut(s) 157, 246, 277, 314
SfcI CTRYAG 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 218
SgeI CNNG 7 cut(s) 41, 49, 118, 132, 152, 290, 325
Sse9I AATT 2 cut(s) 213, 265
SstI GAGCTC 1 cut(s) 277
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 172, 218
TasI AATT 2 cut(s) 213, 265
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 332
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 127
TspRI CASTG 1 cut(s) 15
XapI RAATTY 2 cut(s) 213, 265
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.