FvH4_3g24741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000274
Physical Location & Seq
Reverse (-)
17860974 .. 17865581
4608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24741.t1

Sequence Viewer

Length: 1044 bp
ATGAGTGTTGGGAGGGTGGTGGCCATGGGTCTTGTGAGGGCAGTTCCCTTAGGCTCTTGGTATCGTGATGGTGTCCTTGGCGTTGTGTTATGGGGTGTCAACTCAAATCATAAGCAACTACGATGTCGGGCCGCCGCCGCCGTGCTGAGGAAACCTAGGTTTCAGTATAAGGCTATTCGAGTCAGTGATCGGGAAATGGATAAGCGAAAAATGAACGTAGTTAATGAAGAAGGAAAGAAAAGAAAAGAAAAGAAAAGAAAGAGGACAGTTGATGAAGGAGAAAAGAAGAGAAAGAGGACAGTGGATGAAGAGGATGATGGTGTACTGTTGTCCAAACTATTTCTAGGACAAGAAAAAAGAAGGAGAAAACAAGAGAAGAAAACTAAGATAGAGGAGCCAAAGAAGAAGAAGGCGGAGAAGAAGATATCTGAAATGGAGGAGGAAGAAGAAGATGAGACAGAGACGACAGAGACGAAGATATCAAATCAGTTCAAATCAACATGGCCTGAAATAGACAGTTTTAGAGAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCTCGTTTGGTTTAATTTTTGTAGGATTTTATGAGCATGTCAACAAAAAGCATTTCGGGAAGTCGAACAAGCTCATTGAAACAATCGCCAATACTTACAATGAAAAGCTTGACGCATTTGTGATCAGGGAAGGAAGATACAGAATCACAAGCAGAGATGTATCTGAGATTCTAGGACTTCCTAGAAAATGTGGCTCCTTTGACACAATGCAAGTGGAAGAGAATGCAGCAGAGACATTGTTTGGGACAAGCAAAAGATATTGGCTCTGTGAGAAGACAAACATCATAAAGCCGATTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTAACAAAGAAAGTTGAATTCAAAACGTTGACGCAACTGTTTGCTGGAATCAAGTCTGATCCAGAAAAAAAAAATGTGAATCTGAAGAAGAAGAAGAAGAATCTGAGGAAGAAACAGTGCAAAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

40.65

Weight (kDa)

9.72

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 132, 135, 138, 413
AclI AACGTT 1 cut(s) 938
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 929
AcuI CTGAAG 1 cut(s) 1016
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 147, 863
AgsI TTSAA 5 cut(s) 493, 644, 863, 929, 934
AluBI AGCT 4 cut(s) 556, 637, 673, 913
AluI AGCT 4 cut(s) 556, 637, 673, 913
Alw26I GTCTC 4 cut(s) 449, 455, 464, 791
AlwI GGATC 1 cut(s) 965
AoxI GGCC 3 cut(s) 21, 129, 503
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 1 cut(s) 929
AspA2I CCTAGG 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 129, 901
AvaII GGWCC 1 cut(s) 901
AvrII CCTAGG 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 49
BalI TGGCCA 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 845
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 803
BccI CCATC 2 cut(s) 62, 311
BceAI ACGGC 1 cut(s) 125
BclI TGATCA 1 cut(s) 687
BcoDI GTCTC 4 cut(s) 449, 455, 464, 791
BfaI CTAG 4 cut(s) 156, 344, 737, 747
BisI GCNGC 4 cut(s) 132, 135, 138, 792
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 4 cut(s) 133, 136, 139, 793
Bme18I GGWCC 1 cut(s) 901
BmgT120I GGNCC 2 cut(s) 129, 901
BmiI GGNNCC 3 cut(s) 396, 760, 902
BpiI GAAGAC 1 cut(s) 845
Bpu10I CCTNAGC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 24, 76, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 863
Bse21I CCTNAGG 1 cut(s) 49
BseDI CCNNGG 3 cut(s) 24, 76, 155
BseGI GGATG 3 cut(s) 310, 319, 880
BseLI CCNNNNNNNGG 2 cut(s) 147, 863
BseMII CTCAG 4 cut(s) 137, 548, 720, 1007
BseRI GAGGAG 2 cut(s) 407, 452
BseXI GCAGC 1 cut(s) 803
BshFI GGCC 3 cut(s) 23, 131, 505
BslFI GGGAC 2 cut(s) 823, 914
BslI CCNNNNNNNGG 2 cut(s) 147, 863
BsmAI GTCTC 4 cut(s) 449, 455, 464, 791
BsmBI CGTCTC 2 cut(s) 455, 464
BsmFI GGGAC 2 cut(s) 823, 914
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 3 cut(s) 23, 131, 505
Bsp143I GATC 3 cut(s) 187, 687, 970
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 4 cut(s) 132, 135, 138, 413
BspANI GGCC 3 cut(s) 23, 131, 505
BspCNI CTCAG 4 cut(s) 138, 549, 721, 1008
BspLI GGNNCC 3 cut(s) 396, 760, 902
BspPI GGATC 1 cut(s) 965
BssECI CCNNGG 3 cut(s) 24, 76, 155
BssMI GATC 3 cut(s) 187, 687, 970
BssT1I CCWWGG 3 cut(s) 24, 76, 155
Bst4CI ACNGT 6 cut(s) 268, 301, 327, 518, 951, 1029
Bst6I CTCTTC 3 cut(s) 281, 303, 777
BstDEI CTNAG 6 cut(s) 49, 146, 384, 557, 729, 1016
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 3 cut(s) 310, 319, 880
BstKTI GATC 3 cut(s) 190, 690, 973
BstMAI GTCTC 4 cut(s) 449, 455, 464, 791
BstMBI GATC 3 cut(s) 187, 687, 970
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 605
BstV1I GCAGC 1 cut(s) 803
BstV2I GAAGAC 1 cut(s) 845
Bsu36I CCTNAGG 1 cut(s) 49
BsuRI GGCC 3 cut(s) 23, 131, 505
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 310, 319, 880
BtsIMutI CAGTG 4 cut(s) 190, 306, 545, 1034
Cfr13I GGNCC 2 cut(s) 129, 901
CseI GACGC 2 cut(s) 686, 952
Csp6I GTAC 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 3 cut(s) 25, 501, 602
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 6 cut(s) 49, 146, 384, 557, 729, 1016
DpnI GATC 3 cut(s) 189, 689, 972
DpnII GATC 3 cut(s) 187, 687, 970
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 3 cut(s) 281, 303, 777
EarI CTCTTC 3 cut(s) 281, 303, 777
EciI GGCGGA 1 cut(s) 428
Eco130I CCWWGG 3 cut(s) 24, 76, 155
Eco32I GATATC 2 cut(s) 426, 480
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 1016
Eco81I CCTNAGG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 929
EcoRV GATATC 2 cut(s) 426, 480
EcoT14I CCWWGG 3 cut(s) 24, 76, 155
ErhI CCWWGG 3 cut(s) 24, 76, 155
Esp3I CGTCTC 2 cut(s) 455, 464
FaeI CATG 3 cut(s) 28, 504, 605
FaiI YATR 9 cut(s) 26, 91, 111, 168, 502, 597, 603, 851, 885
FaqI GGGAC 2 cut(s) 823, 914
FatI CATG 3 cut(s) 24, 500, 601
FbaI TGATCA 1 cut(s) 687
Fnu4HI GCNGC 4 cut(s) 132, 135, 138, 792
FokI GGATG 3 cut(s) 317, 326, 887
Fsp4HI GCNGC 4 cut(s) 132, 135, 138, 792
FspBI CTAG 4 cut(s) 156, 344, 737, 747
GluI GCNGC 4 cut(s) 132, 135, 138, 792
HaeIII GGCC 3 cut(s) 23, 131, 505
HgaI GACGC 2 cut(s) 686, 952
Hin1II CATG 3 cut(s) 28, 504, 605
HincII GTYRAC 3 cut(s) 100, 607, 942
HindII GTYRAC 3 cut(s) 100, 607, 942
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 6 cut(s) 180, 708, 733, 960, 991, 1012
Hpy166II GTNNAC 4 cut(s) 100, 323, 607, 942
Hpy188I TCNGA 5 cut(s) 430, 730, 970, 996, 1017
Hpy188III TCNNGA 4 cut(s) 65, 191, 622, 974
Hpy8I GTNNAC 4 cut(s) 100, 323, 607, 942
HpyAV CCTTC 6 cut(s) 224, 269, 354, 403, 689, 857
HpyCH4III ACNGT 6 cut(s) 268, 301, 327, 518, 951, 1029
HpyCH4IV ACGT 2 cut(s) 216, 938
HpyCH4V TGCA 3 cut(s) 775, 791, 1032
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 6 cut(s) 49, 146, 384, 557, 729, 1016
HpySE526I ACGT 2 cut(s) 216, 938
Hsp92II CATG 3 cut(s) 28, 504, 605
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 3 cut(s) 187, 687, 970
LmnI GCTCC 2 cut(s) 394, 764
LpnPI CCDG 4 cut(s) 519, 676, 942, 987
Lsp1109I GCAGC 1 cut(s) 803
MaeI CTAG 4 cut(s) 156, 344, 737, 747
MaeII ACGT 2 cut(s) 216, 938
MalI GATC 3 cut(s) 189, 689, 972
MboI GATC 3 cut(s) 187, 687, 970
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 2 cut(s) 579, 929
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 1 cut(s) 189
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
MseI TTAA 2 cut(s) 222, 578
Msp20I TGGCCA 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 793
MwoI GCNNNNNNNGC 1 cut(s) 137
NcoI CCATGG 1 cut(s) 24
NdeII GATC 3 cut(s) 187, 687, 970
NlaIII CATG 3 cut(s) 28, 504, 605
NlaIV GGNNCC 3 cut(s) 396, 760, 902
NspI RCATGY 1 cut(s) 605
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 5 cut(s) 708, 733, 960, 991, 1012
PkrI GCNGC 4 cut(s) 133, 136, 139, 793
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 901
Psp1406I AACGTT 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 901
PspN4I GGNNCC 3 cut(s) 396, 760, 902
PspPI GGNCC 2 cut(s) 129, 901
PspPPI RGGWCCY 1 cut(s) 901
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 222, 578
SatI GCNGC 4 cut(s) 132, 135, 138, 792
Sau3AI GATC 3 cut(s) 187, 687, 970
Sau96I GGNCC 2 cut(s) 129, 901
SchI GAGTC 1 cut(s) 189
SetI ASST 9 cut(s) 157, 161, 219, 558, 639, 675, 906, 915, 941
SinI GGWCC 1 cut(s) 901
Sse9I AATT 2 cut(s) 579, 929
SsiI CCGC 4 cut(s) 132, 135, 138, 413
SspMI CTAG 4 cut(s) 156, 344, 737, 747
StyI CCWWGG 3 cut(s) 24, 76, 155
TaaI ACNGT 6 cut(s) 268, 301, 327, 518, 951, 1029
TaiI ACGT 2 cut(s) 219, 941
TaqI TCGA 2 cut(s) 178, 629
TasI AATT 2 cut(s) 579, 929
TatI WGTACW 1 cut(s) 322
TauI GCSGC 3 cut(s) 134, 137, 140
TfiI GAWTC 5 cut(s) 708, 733, 960, 991, 1012
Tru1I TTAA 2 cut(s) 222, 578
Tru9I TTAA 2 cut(s) 222, 578
TscAI CASTG 4 cut(s) 190, 306, 552, 1034
TseI GCWGC 1 cut(s) 791
TspDTI ATGAA 6 cut(s) 227, 240, 288, 321, 552, 681
TspRI CASTG 4 cut(s) 190, 306, 552, 1034
VpaK11BI GGWCC 1 cut(s) 901
XapI RAATTY 1 cut(s) 929
XceI RCATGY 1 cut(s) 605
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 4 cut(s) 156, 344, 737, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.