FvH4_5g33260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000274
Physical Location & Seq
Forward (+)
24059145 .. 24060604
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33260.t1

Sequence Viewer

Length: 978 bp
ATGCAAAATTCTGAAGAATTAGATCTTCAAGCATTAGAAGAGGTTGAGAGAGAGCTAAAAAAGAACATGGCCGGTGAGGATGATAAAGAGAAGGAAGAGGCAACAGATAAAGTTGCAAGCGCTCATAAAAAAGAGATGAGTGAGCCTCAGATTCCAACCCAAAATTCAGAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACGAAGGCTTACAGTGAGCAACCACCAGAGTCACCACCAAGGAGAACGGTTGCGGAAGAAGCGCGTTGGTCGCCGAAAACACCGGTGACAGAGATGCCTTCTTTTGATTTGGGAATCTCTCCCTGGGTATCTTGGAATAGCCCATTGGTGACTGGAATAATAACCATACCAGAGAAGAATTTCAATACTCCCTCTAGCCCTCAAATCATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTATCTCCACAGGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATTGAGATTGAGCTGACAGAGGAAAACTCTGGAAGGACAGCATCATCCTTGGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAGAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACGAGTATGGACATGTAATTCATACTATTGGTGCTGATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCGAGAGCAATACGGGTTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

37.35

Weight (kDa)

4.92

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccII CGCG 2 cut(s) 304, 857
AciI CCGC 3 cut(s) 293, 855, 887
AclWI GGATC 3 cut(s) 632, 917, 930
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 3 cut(s) 7, 163, 418
AcuI CTGAAG 2 cut(s) 33, 783
AfeI AGCGCT 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 790
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 4 cut(s) 29, 185, 424, 913
AjnI CCWGG 1 cut(s) 362
AjuI GAANNNNNNNTTGG 4 cut(s) 148, 180, 368, 400
AluBI AGCT 5 cut(s) 55, 211, 562, 761, 963
AluI AGCT 5 cut(s) 55, 211, 562, 761, 963
AlwI GGATC 3 cut(s) 632, 917, 930
AlwNI CAGNNNCTG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 121
AoxI GGCC 3 cut(s) 69, 644, 705
ApoI RAATTY 3 cut(s) 7, 163, 418
AseI ATTAAT 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 322
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 2 cut(s) 122, 304
AsuHPI GGTGA 4 cut(s) 86, 264, 337, 400
BamHI GGATCC 1 cut(s) 922
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 364
BfaI CTAG 2 cut(s) 435, 530
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 484
BglII AGATCT 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 825, 924
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 324, 599
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 560, 592
BpmI CTGGAG 1 cut(s) 761
BsaJI CCNNGG 4 cut(s) 278, 362, 363, 597
BsaWI WCCGGW 1 cut(s) 322
Bse118I RCCGGY 3 cut(s) 71, 322, 646
Bse1I ACTGG 2 cut(s) 397, 674
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 4 cut(s) 278, 362, 363, 597
BseGI GGATG 3 cut(s) 85, 593, 609
BseMII CTCAG 2 cut(s) 161, 893
BseNI ACTGG 2 cut(s) 397, 674
BseRI GAGGAG 1 cut(s) 554
BseYI CCCAGC 1 cut(s) 954
Bsh1236I CGCG 2 cut(s) 304, 857
BshFI GGCC 3 cut(s) 71, 646, 707
BshTI ACCGGT 1 cut(s) 322
BsiSI CCGG 3 cut(s) 72, 323, 647
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 3 cut(s) 71, 646, 707
Bsp143I GATC 4 cut(s) 22, 492, 624, 922
BspACI CCGC 3 cut(s) 293, 855, 887
BspANI GGCC 3 cut(s) 71, 646, 707
BspCNI CTCAG 2 cut(s) 160, 892
BspFNI CGCG 2 cut(s) 304, 857
BspLI GGNNCC 2 cut(s) 825, 924
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 3 cut(s) 632, 917, 930
BspQI GCTCTTC 1 cut(s) 201
BsrFI RCCGGY 3 cut(s) 71, 322, 646
BsrI ACTGG 2 cut(s) 397, 674
BssAI RCCGGY 3 cut(s) 71, 322, 646
BssECI CCNNGG 4 cut(s) 278, 362, 363, 597
BssMI GATC 4 cut(s) 22, 492, 624, 922
BssT1I CCWWGG 2 cut(s) 278, 597
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 254, 289
Bst6I CTCTTC 4 cut(s) 33, 90, 201, 531
BstC8I GCNNGC 2 cut(s) 118, 648
BstDEI CTNAG 3 cut(s) 147, 879, 964
BstF5I GGATG 3 cut(s) 85, 593, 609
BstFNI CGCG 2 cut(s) 304, 857
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 304
BstKTI GATC 4 cut(s) 25, 495, 627, 925
BstMBI GATC 4 cut(s) 22, 492, 624, 922
BstMWI GCNNNNNNNGC 4 cut(s) 299, 310, 643, 960
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 2 cut(s) 304, 857
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 22, 922
BstYI RGATCY 2 cut(s) 22, 922
BsuRI GGCC 3 cut(s) 71, 646, 707
BtsCI GGATG 3 cut(s) 85, 593, 609
BtsIMutI CAGTG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 118, 648
CaiI CAGNNNCTG 1 cut(s) 518
CfoI GCGC 2 cut(s) 122, 304
Cfr10I RCCGGY 3 cut(s) 71, 322, 646
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 3 cut(s) 67, 791, 919
DdeI CTNAG 3 cut(s) 147, 879, 964
DpnI GATC 4 cut(s) 24, 494, 626, 924
DpnII GATC 4 cut(s) 22, 492, 624, 922
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 4 cut(s) 33, 90, 201, 531
EarI CTCTTC 4 cut(s) 33, 90, 201, 531
Eco130I CCWWGG 2 cut(s) 278, 597
Eco47III AGCGCT 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 33, 783
EcoRII CCWGG 1 cut(s) 362
EcoT14I CCWWGG 2 cut(s) 278, 597
ErhI CCWWGG 2 cut(s) 278, 597
FaeI CATG 3 cut(s) 70, 794, 922
FatI CATG 3 cut(s) 66, 790, 918
FauNDI CATATG 1 cut(s) 613
FokI GGATG 3 cut(s) 92, 580, 616
FspBI CTAG 2 cut(s) 435, 530
GlaI GCGC 2 cut(s) 121, 303
GsaI CCCAGC 1 cut(s) 958
GsuI CTGGAG 1 cut(s) 761
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 3 cut(s) 71, 646, 707
HapII CCGG 3 cut(s) 72, 323, 647
HhaI GCGC 2 cut(s) 122, 304
Hin1II CATG 3 cut(s) 70, 794, 922
Hin6I GCGC 2 cut(s) 120, 302
HinP1I GCGC 2 cut(s) 120, 302
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 4 cut(s) 151, 269, 354, 877
HpaII CCGG 3 cut(s) 72, 323, 647
HphI GGTGA 4 cut(s) 86, 264, 337, 400
Hpy188I TCNGA 5 cut(s) 13, 150, 169, 624, 882
Hpy188III TCNNGA 4 cut(s) 530, 579, 628, 740
HpyAV CCTTC 8 cut(s) 85, 238, 348, 576, 636, 697, 758, 877
HpyCH4III ACNGT 2 cut(s) 254, 289
HpyCH4V TGCA 4 cut(s) 4, 116, 479, 918
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 310, 643, 960
HpyF3I CTNAG 3 cut(s) 147, 879, 964
Hsp92II CATG 3 cut(s) 70, 794, 922
HspAI GCGC 2 cut(s) 120, 302
KroI GCCGGC 1 cut(s) 646
KroNI GCCGGC 1 cut(s) 648
Kzo9I GATC 4 cut(s) 22, 492, 624, 922
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 742
LweI GCATC 2 cut(s) 324, 599
MaeI CTAG 2 cut(s) 435, 530
MaeIII GTNAC 3 cut(s) 270, 325, 388
MalI GATC 4 cut(s) 24, 494, 626, 924
MboI GATC 4 cut(s) 22, 492, 624, 922
MflI RGATCY 2 cut(s) 22, 922
MluCI AATT 6 cut(s) 7, 17, 163, 188, 418, 795
MlyI GAGTC 2 cut(s) 278, 871
MmeI TCCRAC 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 3 cut(s) 213, 525, 684
MslI CAYNNNNRTG 1 cut(s) 913
MspI CCGG 3 cut(s) 72, 323, 647
MspR9I CCNGG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 2 cut(s) 304, 857
MwoI GCNNNNNNNGC 4 cut(s) 299, 310, 643, 960
NaeI GCCGGC 1 cut(s) 648
NdeI CATATG 1 cut(s) 613
NdeII GATC 4 cut(s) 22, 492, 624, 922
NgoMIV GCCGGC 1 cut(s) 646
NlaIII CATG 3 cut(s) 70, 794, 922
NlaIV GGNNCC 2 cut(s) 825, 924
NmuCI GTSAC 3 cut(s) 270, 325, 388
NspI RCATGY 1 cut(s) 794
PasI CCCWGGG 1 cut(s) 363
PciI ACATGT 1 cut(s) 790
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 151, 354
PinAI ACCGGT 1 cut(s) 322
PleI GAGTC 2 cut(s) 277, 871
PpsI GAGTC 2 cut(s) 277, 871
PscI ACATGT 1 cut(s) 790
PshBI ATTAAT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 954
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 825, 924
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 2 cut(s) 22, 922
RseI CAYNNNNRTG 1 cut(s) 913
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 3 cut(s) 213, 525, 684
Sau3AI GATC 4 cut(s) 22, 492, 624, 922
SchI GAGTC 2 cut(s) 278, 871
ScrFI CCNGG 1 cut(s) 364
SfaNI GCATC 2 cut(s) 324, 599
SgrAI CRCCGGYG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 913
Sse9I AATT 6 cut(s) 7, 17, 163, 188, 418, 795
SsiI CCGC 3 cut(s) 293, 855, 887
SspMI CTAG 2 cut(s) 435, 530
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 2 cut(s) 278, 597
TaaI ACNGT 2 cut(s) 254, 289
TasI AATT 6 cut(s) 7, 17, 163, 188, 418, 795
TfiI GAWTC 2 cut(s) 151, 354
Tru1I TTAA 3 cut(s) 213, 525, 684
Tru9I TTAA 3 cut(s) 213, 525, 684
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 3 cut(s) 270, 325, 388
Tsp45I GTSAC 3 cut(s) 270, 325, 388
TspDTI ATGAA 5 cut(s) 252, 549, 600, 788, 831
TspRI CASTG 1 cut(s) 259
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 3 cut(s) 7, 163, 418
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 2 cut(s) 435, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.