Rorug02G0337500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000274
Physical Location & Seq
Reverse (-)
41936085 .. 41937381
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0337500.1

Sequence Viewer

Length: 1023 bp
ATGGAGGTCAACAACCAATGCCAATTTATCTGCTTTGCCTTGATCCTCATCTTGGGGGCTTGGTCTTCTGAAGCCACTTCTCGAAATCTCCAAGATGCATCAATGTACGGGAGGTACGAGCAATGGATGGCTCGTTATGGACGTGTCTATAATGATGTCAATGAGAAGGAGGAACGCTTCCAGATATTCAAGGACAATGTGGCATTTATAGAATCTTCCAATAATGCGGGAAACAAACTTTACAAATTGAGTGTGAATCGATTTGCAGACCTCACAAATGAAGAATTCACTGCCACAAGAAACCGGTTCAAGGGGCATGAGTGTTCCACAAAGACCACTACTTTCAGGTATGAAAATGCTAGCGTGCCAGCTACAATGGACTGGAGACAGAAAGGAGCTGTAACTCCCGTCAAGGACCAAGGCCAATGTGGGTGCTGTTGGGCGTTCTCAGCCGTGGCAGCCATGGAAGGAATTACTCAACTTACAACTGGTAAATTGATTTCTTTGTCTGAGCAAGAGCTAGTTGACTGTGATGTCAATGGTGAAGATCAAGGCTGTGAGGGTGGCTTGATGGACGATGCTTTTCAGTTCATTAATCAAAATCATGGACTCAGTACCGAGGCTAACTATCCCTACACCGGTGTTGATGGTACATGCAATGCACAGAAGGAGGCAAGCCATGCAGCCTCGATAACTGGGCACGAAGATGTGCCTGCTAACAGTGAAAGCGCACTTCTTAAGGCAGTTGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGCGGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACCGGAACCTGTGGAACGAGCCTGGACCATGGCGTTACCGCTGTTGGTTATGGCATCAGTGATGATGGGACTAAGTATTGGTTGGTTAAGAACTCATGGGGCGCAGAATGGGGAGAAGAAGGTTACATAAGAATGCAAAGAGATGTTGCTGCACAGGAAGGTCTTTGTGGTATAGCTATGGAAGCCTCTTACCCCACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.21

Weight (kDa)

4.62

Isoelectric Point (pI)

20.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 39 - 96 2.5e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 122 - 339 2.5e-84 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
AciI CCGC 3 cut(s) 227, 783, 858
AclWI GGATC 2 cut(s) 37, 793
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 4 cut(s) 107, 116, 616, 652
AfiI CCNNNNNNNGG 3 cut(s) 52, 310, 638
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 142
AgeI ACCGGT 2 cut(s) 303, 638
AgsI TTSAA 3 cut(s) 190, 310, 807
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 840
AluBI AGCT 4 cut(s) 371, 398, 520, 995
AluI AGCT 4 cut(s) 371, 398, 520, 995
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 2 cut(s) 37, 793
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 3 cut(s) 458, 683, 968
ApoI RAATTY 1 cut(s) 284
AseI ATTAAT 1 cut(s) 594
AsiGI ACCGGT 2 cut(s) 303, 638
AspLEI GCGC 2 cut(s) 731, 923
AspS9I GGNCC 2 cut(s) 415, 844
AsuHPI GGTGA 2 cut(s) 554, 811
AsuNHI GCTAGC 2 cut(s) 359, 779
AvaII GGWCC 2 cut(s) 415, 844
BaeGI GKGCMC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 470, 695, 955
BccI CCATC 4 cut(s) 121, 565, 641, 878
BceAI ACGGC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 842
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 3 cut(s) 360, 521, 780
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 3 cut(s) 459, 684, 969
BlsI GCNGC 3 cut(s) 460, 685, 970
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 2 cut(s) 415, 844
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 415, 844
BmiI GGNNCC 1 cut(s) 826
BmrFI CCNGG 1 cut(s) 842
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 5 cut(s) 85, 107, 568, 766, 882
BmtI GCTAGC 2 cut(s) 363, 783
BmuI ACTGGG 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 403
Bsa29I ATCGAT 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 5 cut(s) 418, 453, 462, 618, 847
BsaWI WCCGGW 3 cut(s) 303, 638, 821
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 310, 638
Bse118I RCCGGY 2 cut(s) 303, 638
Bse1I ACTGG 3 cut(s) 386, 493, 700
Bse3DI GCAATG 2 cut(s) 128, 664
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 1 cut(s) 842
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 5 cut(s) 418, 453, 462, 618, 847
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 3 cut(s) 52, 310, 638
BseMI GCAATG 2 cut(s) 128, 664
BseMII CTCAG 3 cut(s) 462, 501, 625
BseNI ACTGG 3 cut(s) 386, 493, 700
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 3 cut(s) 470, 695, 955
BsgI GTGCAG 1 cut(s) 954
BshFI GGCC 1 cut(s) 423
BshTI ACCGGT 2 cut(s) 303, 638
BshVI ATCGAT 1 cut(s) 259
BsiSI CCGG 3 cut(s) 304, 639, 822
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 3 cut(s) 52, 310, 638
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 901
BsmI GAATGC 1 cut(s) 957
BsnI GGCC 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 3 cut(s) 42, 547, 785
Bsp19I CCATGG 2 cut(s) 462, 847
BspACI CCGC 3 cut(s) 227, 783, 858
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 3 cut(s) 461, 502, 624
BspDI ATCGAT 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 826
BspOI GCTAGC 2 cut(s) 363, 783
BspPI GGATC 2 cut(s) 37, 793
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 128, 664
BsrFI RCCGGY 2 cut(s) 303, 638
BsrI ACTGG 3 cut(s) 386, 493, 700
BssAI RCCGGY 2 cut(s) 303, 638
BssECI CCNNGG 5 cut(s) 418, 453, 462, 618, 847
BssMI GATC 3 cut(s) 42, 547, 785
BssT1I CCWWGG 3 cut(s) 418, 462, 847
Bst2UI CCWGG 1 cut(s) 842
Bst4CI ACNGT 2 cut(s) 530, 722
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 6 cut(s) 361, 365, 369, 676, 714, 781
BstDEI CTNAG 4 cut(s) 448, 510, 611, 891
BstDSI CCRYGG 3 cut(s) 453, 462, 847
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 2 cut(s) 731, 923
BstKTI GATC 3 cut(s) 45, 550, 788
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 42, 547, 785
BstMWI GCNNNNNNNGC 5 cut(s) 449, 458, 680, 776, 1001
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 840
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 470, 695, 955
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
Bsu15I ATCGAT 1 cut(s) 259
BsuRI GGCC 1 cut(s) 423
BsuTUI ATCGAT 1 cut(s) 259
BtgI CCRYGG 3 cut(s) 453, 462, 847
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 2 cut(s) 288, 1014
BtsIMutI CAGTG 4 cut(s) 288, 727, 883, 1014
Cac8I GCNNGC 6 cut(s) 361, 365, 369, 676, 714, 781
CfoI GCGC 2 cut(s) 731, 923
Cfr10I RCCGGY 2 cut(s) 303, 638
Cfr13I GGNCC 2 cut(s) 415, 844
ClaI ATCGAT 1 cut(s) 259
Csp6I GTAC 4 cut(s) 106, 115, 615, 651
CspAI ACCGGT 2 cut(s) 303, 638
CviAII CATG 7 cut(s) 317, 463, 605, 654, 680, 848, 915
CviQI GTAC 4 cut(s) 106, 115, 615, 651
DdeI CTNAG 4 cut(s) 448, 510, 611, 891
DpnI GATC 3 cut(s) 44, 549, 787
DpnII GATC 3 cut(s) 42, 547, 785
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eco130I CCWWGG 3 cut(s) 418, 462, 847
Eco47I GGWCC 2 cut(s) 415, 844
Eco57I CTGAAG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 840
EcoT14I CCWWGG 3 cut(s) 418, 462, 847
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 3 cut(s) 418, 462, 847
FaeI CATG 7 cut(s) 320, 466, 608, 657, 683, 851, 918
FaqI GGGAC 1 cut(s) 901
FatI CATG 7 cut(s) 316, 462, 604, 653, 679, 847, 914
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 459, 684, 969
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 459, 684, 969
FspBI CTAG 3 cut(s) 360, 521, 780
GlaI GCGC 2 cut(s) 730, 922
GluI GCNGC 3 cut(s) 459, 684, 969
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 1 cut(s) 423
HapII CCGG 3 cut(s) 304, 639, 822
HhaI GCGC 2 cut(s) 731, 923
Hin1II CATG 7 cut(s) 320, 466, 608, 657, 683, 851, 918
Hin6I GCGC 2 cut(s) 729, 921
HinP1I GCGC 2 cut(s) 729, 921
HincII GTYRAC 2 cut(s) 10, 526
HindII GTYRAC 2 cut(s) 10, 526
HinfI GANTC 3 cut(s) 212, 256, 609
HpaII CCGG 3 cut(s) 304, 639, 822
HphI GGTGA 2 cut(s) 554, 811
Hpy166II GTNNAC 2 cut(s) 10, 526
Hpy188I TCNGA 3 cut(s) 70, 511, 790
Hpy188III TCNNGA 2 cut(s) 81, 181
Hpy8I GTNNAC 2 cut(s) 10, 526
HpyAV CCTTC 5 cut(s) 160, 461, 661, 932, 971
HpyCH4III ACNGT 2 cut(s) 530, 722
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 7 cut(s) 98, 266, 657, 662, 683, 955, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 449, 458, 680, 776, 1001
HpyF3I CTNAG 4 cut(s) 448, 510, 611, 891
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 7 cut(s) 320, 466, 608, 657, 683, 851, 918
HspAI GCGC 2 cut(s) 729, 921
Kzo9I GATC 3 cut(s) 42, 547, 785
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 3 cut(s) 470, 695, 955
LweI GCATC 5 cut(s) 85, 107, 568, 766, 882
MaeI CTAG 3 cut(s) 360, 521, 780
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 3 cut(s) 400, 853, 941
MalI GATC 3 cut(s) 44, 549, 787
MboI GATC 3 cut(s) 42, 547, 785
MboII GAAGA 6 cut(s) 57, 207, 293, 557, 716, 947
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 6 cut(s) 23, 245, 284, 471, 494, 797
MlyI GAGTC 1 cut(s) 603
MnlI CCTC 9 cut(s) 56, 105, 163, 281, 553, 613, 664, 697, 1015
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 3 cut(s) 594, 738, 906
MslI CAYNNNNRTG 2 cut(s) 705, 950
MspA1I CMGCKG 1 cut(s) 860
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 3 cut(s) 304, 639, 822
MspR9I CCNGG 1 cut(s) 842
Mva1269I GAATGC 1 cut(s) 957
MvaI CCWGG 1 cut(s) 842
MwoI GCNNNNNNNGC 5 cut(s) 449, 458, 680, 776, 1001
NcoI CCATGG 2 cut(s) 462, 847
NdeII GATC 3 cut(s) 42, 547, 785
NheI GCTAGC 2 cut(s) 359, 779
NlaIII CATG 7 cut(s) 320, 466, 608, 657, 683, 851, 918
NlaIV GGNNCC 1 cut(s) 826
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 657
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 139
PctI GAATGC 1 cut(s) 957
PfeI GAWTC 2 cut(s) 212, 256
PinAI ACCGGT 2 cut(s) 303, 638
PkrI GCNGC 3 cut(s) 460, 685, 970
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 840
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 1 cut(s) 826
PspPI GGNCC 2 cut(s) 415, 844
PsuI RGATCY 1 cut(s) 785
RsaI GTAC 4 cut(s) 107, 116, 616, 652
RsaNI GTAC 4 cut(s) 106, 115, 615, 651
RseI CAYNNNNRTG 2 cut(s) 705, 950
SaqAI TTAA 3 cut(s) 594, 738, 906
SatI GCNGC 3 cut(s) 459, 684, 969
Sau3AI GATC 3 cut(s) 42, 547, 785
Sau96I GGNCC 2 cut(s) 415, 844
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 1 cut(s) 842
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 5 cut(s) 85, 107, 568, 766, 882
SgrAI CRCCGGYG 1 cut(s) 638
SinI GGWCC 2 cut(s) 415, 844
SmiMI CAYNNNNRTG 2 cut(s) 705, 950
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 6 cut(s) 23, 245, 284, 471, 494, 797
SsiI CCGC 3 cut(s) 227, 783, 858
SspMI CTAG 3 cut(s) 360, 521, 780
StyD4I CCNGG 1 cut(s) 840
StyI CCWWGG 3 cut(s) 418, 462, 847
TaaI ACNGT 2 cut(s) 530, 722
TaiI ACGT 1 cut(s) 145
TaqI TCGA 3 cut(s) 82, 259, 689
TasI AATT 6 cut(s) 23, 245, 284, 471, 494, 797
TfiI GAWTC 2 cut(s) 212, 256
Tru1I TTAA 3 cut(s) 594, 738, 906
Tru9I TTAA 3 cut(s) 594, 738, 906
TscAI CASTG 4 cut(s) 295, 727, 883, 1021
TseI GCWGC 3 cut(s) 458, 683, 968
TspDTI ATGAA 3 cut(s) 294, 366, 580
TspRI CASTG 4 cut(s) 295, 727, 883, 1021
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 415, 844
VspI ATTAAT 1 cut(s) 594
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 3 cut(s) 360, 521, 780
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.