Rh3CG119800

high mobility group

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
9648202 .. 9648879
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG119800.1

Sequence Viewer

Length: 222 bp
ATGGAGATGGTGAGCTCCAAATCGGAGACCACCAGAGAGAGTATTTCTTATGATTTCTGCAATGAGCAGCCGGAGATCGATGGGTGCCTAAAGGATGTCCCAGTGGCGCTCATAAGCTTTCGCAATTGTAGCCTTGATGCCAAAATCAAGACCAACATAGAGGCAAACAACAAGTTTGAATTTGATATTCCAAATTTGAGTAAAGTAGCAAACGCTCTTTGA

Protein Analysis

73

Amino Acids

8.17

Weight (kDa)

4.61

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AcsI RAATTY 2 cut(s) 179, 193
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 2 cut(s) 15, 117
AluI AGCT 2 cut(s) 15, 117
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 2 cut(s) 179, 193
AspLEI GCGC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 78
BseGI GGATG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 84
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 75
BstF5I GGATG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 108
CfoI GCGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 78
CviJI RGCY 4 cut(s) 15, 70, 117, 132
CviKI_1 RGCY 4 cut(s) 15, 70, 117, 132
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 17
FaiI YATR 3 cut(s) 51, 113, 158
FaqI GGGAC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 68
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 110
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 109
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 115
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 46, 84, 114
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 127
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MfeI CAATTG 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 124, 179, 193
MnlI CCTC 1 cut(s) 154
MspI CCGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 1 cut(s) 75
NlaIV GGNNCC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 17
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 17
SetI ASST 2 cut(s) 17, 119
SfaNI GCATC 1 cut(s) 127
SgeI CNNG 6 cut(s) 45, 83, 113, 146, 160, 184
Sse9I AATT 3 cut(s) 124, 179, 193
SstI GAGCTC 1 cut(s) 17
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 124, 179, 193
TscAI CASTG 1 cut(s) 108
TseI GCWGC 1 cut(s) 67
TspRI CASTG 1 cut(s) 108
XapI RAATTY 2 cut(s) 179, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.