FvH4_3g33300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000274
Physical Location & Seq
Reverse (-)
28690267 .. 28691814
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33300.t1

Sequence Viewer

Length: 690 bp
ATGAAGTTGCTTTTGGAAATGGATAAGCGAAAAATGAACGCAGTTAATGAAGAAGGAAAGAAGAGAAAGAGGATAGTTGATGAAGGAGCAAAGAAGAGAAAGAGGACAGTGGATGAAGAGGCTGATGGTGTACTGCTGTCCAAACTATTTCTGGGACAGGAAAAAAGAAGGAGAAAACAAGAGAAGAAAAATAAGATAGAGGAGCCAAAGAAGAAGAAGGCCTTGAAGAAGACATCTCAAATAGAGGAGGAGGAAGAAGAAGAAGATGAGACAGAGAAGAAGAAATCAAATCAGTTCAGATCAACATGGCCTGAAGTGGACAGTTTTAGAGAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCCCGTTTGGTTTACTTTTTGAAGGATTTTATGAGCATGTCAACAAAAAGCACTTTGGGAAGTCGAACAAGCTCATTGAAACAATCGCCGACACTTACAATGAAAAGCTTGATGCATTTGTGATCGGGGAAGGAAGATACAGAATCACAAGCAGAGATGTATCTAAGATTCTAGGACTTCCTAGAAAAGGTGGCTCCTTTGAGACAATGGAAGTGGAAGAGAATGCAGCAGAGACATTATTTGGGAAAAAACAAAAGAGTCACAAAAAAGTGTGTGATGGACGTTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.62

Weight (kDa)

9.4

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 3 cut(s) 226, 392, 449
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 361, 442, 478, 665
AluI AGCT 4 cut(s) 361, 442, 478, 665
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 3 cut(s) 263, 566, 596
AoxI GGCC 3 cut(s) 219, 308, 370
ApeKI GCWGC 2 cut(s) 596, 677
AspS9I GGNCC 2 cut(s) 371, 671
AvaII GGWCC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 608
BccI CCATC 2 cut(s) 119, 641
BcoDI GTCTC 3 cut(s) 263, 566, 596
BfaI CTAG 2 cut(s) 542, 552
BisI GCNGC 2 cut(s) 597, 678
BlsI GCNGC 2 cut(s) 598, 679
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 371, 671
BmiI GGNNCC 2 cut(s) 204, 565
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 651
Bsc4I CCNNNNNNNGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 3 cut(s) 215, 260, 263
BseXI GCAGC 1 cut(s) 608
BshFI GGCC 3 cut(s) 221, 310, 372
BsiHKAI GWGCWC 1 cut(s) 667
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 3 cut(s) 263, 566, 596
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 3 cut(s) 221, 310, 372
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 2 cut(s) 299, 492
BspANI GGCC 3 cut(s) 221, 310, 372
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 204, 565
BssMI GATC 2 cut(s) 299, 492
Bst4CI ACNGT 2 cut(s) 109, 323
Bst6I CTCTTC 4 cut(s) 56, 89, 111, 582
BstDEI CTNAG 2 cut(s) 362, 534
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 2 cut(s) 302, 495
BstMAI GTCTC 3 cut(s) 263, 566, 596
BstMBI GATC 2 cut(s) 299, 492
BstNSI RCATGY 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 3 cut(s) 221, 310, 372
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 114, 350
Cfr13I GGNCC 2 cut(s) 371, 671
Csp6I GTAC 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 2 cut(s) 306, 407
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 362, 534
DpnI GATC 2 cut(s) 301, 494
DpnII GATC 2 cut(s) 299, 492
Eam1104I CTCTTC 4 cut(s) 56, 89, 111, 582
EarI CTCTTC 4 cut(s) 56, 89, 111, 582
Ecl136II GAGCTC 1 cut(s) 665
Eco147I AGGCCT 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 671
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 665
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 667
FaeI CATG 2 cut(s) 309, 410
FaiI YATR 3 cut(s) 307, 402, 408
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 168
FatI CATG 2 cut(s) 305, 406
Fnu4HI GCNGC 2 cut(s) 597, 678
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 2 cut(s) 597, 678
FspBI CTAG 2 cut(s) 542, 552
GluI GCNGC 2 cut(s) 597, 678
HaeIII GGCC 3 cut(s) 221, 310, 372
Hin1II CATG 2 cut(s) 309, 410
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 513, 538, 628
Hpy166II GTNNAC 4 cut(s) 131, 319, 383, 412
Hpy188I TCNGA 1 cut(s) 299
Hpy8I GTNNAC 4 cut(s) 131, 319, 383, 412
HpyAV CCTTC 6 cut(s) 47, 77, 162, 211, 386, 494
HpyCH4III ACNGT 2 cut(s) 109, 323
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 2 cut(s) 485, 596
HpyF3I CTNAG 2 cut(s) 362, 534
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 2 cut(s) 309, 410
Kzo9I GATC 2 cut(s) 299, 492
LmnI GCTCC 3 cut(s) 86, 202, 569
LpnPI CCDG 3 cut(s) 137, 143, 324
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 542, 552
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 629
MalI GATC 2 cut(s) 301, 494
MboI GATC 2 cut(s) 299, 492
MhlI GDGCHC 1 cut(s) 667
MlyI GAGTC 1 cut(s) 637
MnlI CCTC 7 cut(s) 63, 96, 112, 193, 238, 241, 244
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 2 cut(s) 45, 657
Mva1269I GAATGC 1 cut(s) 598
NdeII GATC 2 cut(s) 299, 492
NlaIII CATG 2 cut(s) 309, 410
NlaIV GGNNCC 2 cut(s) 204, 565
NmuCI GTSAC 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 410
PceI AGGCCT 1 cut(s) 221
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 513, 538
PkrI GCNGC 2 cut(s) 598, 679
PleI GAGTC 1 cut(s) 636
PpsI GAGTC 1 cut(s) 636
Psp124BI GAGCTC 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 204, 565
PspPI GGNCC 2 cut(s) 371, 671
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 2 cut(s) 45, 657
SatI GCNGC 2 cut(s) 597, 678
Sau3AI GATC 2 cut(s) 299, 492
Sau96I GGNCC 2 cut(s) 371, 671
SchI GAGTC 1 cut(s) 637
SduI GDGCHC 1 cut(s) 667
SetI ASST 6 cut(s) 363, 444, 480, 562, 655, 667
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SseBI AGGCCT 1 cut(s) 221
SspMI CTAG 2 cut(s) 542, 552
SstI GAGCTC 1 cut(s) 667
StuI AGGCCT 1 cut(s) 221
TaaI ACNGT 2 cut(s) 109, 323
TaiI ACGT 1 cut(s) 655
TaqI TCGA 1 cut(s) 434
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 2 cut(s) 513, 538
Tru1I TTAA 2 cut(s) 45, 657
Tru9I TTAA 2 cut(s) 45, 657
TscAI CASTG 2 cut(s) 114, 357
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 2 cut(s) 596, 677
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 7 cut(s) 17, 50, 63, 96, 129, 357, 486
TspRI CASTG 2 cut(s) 114, 357
VpaK11BI GGWCC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 555
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XspI CTAG 2 cut(s) 542, 552
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.