FvH4_7g32810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000274
Physical Location & Seq
Reverse (-)
23512293 .. 23513165
873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32810.t1

Sequence Viewer

Length: 465 bp
ATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCGATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACATCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGGAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGGTTTCTTAACCATAGGCATAGTTGGTACTCAATACGTCATCCGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

18.23

Weight (kDa)

9.94

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 78 - 137 6.6e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AciI CCGC 2 cut(s) 130, 458
AclI AACGTT 1 cut(s) 356
AcuI CTGAAG 2 cut(s) 137, 392
AfaI GTAC 2 cut(s) 326, 443
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 242, 391
AluBI AGCT 3 cut(s) 169, 190, 394
AluI AGCT 3 cut(s) 169, 190, 394
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 4 cut(s) 87, 246, 289, 454
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 11, 252
BspACI CCGC 2 cut(s) 130, 458
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 11, 252
BssT1I CCWWGG 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 282, 395
BstF5I GGATG 4 cut(s) 87, 246, 289, 454
BstKTI GATC 2 cut(s) 14, 255
BstMBI GATC 2 cut(s) 11, 252
BstNSI RCATGY 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 87
BstXI CCANNNNNNTGG 2 cut(s) 58, 301
BtsCI GGATG 4 cut(s) 87, 246, 289, 454
BtsIMutI CAGTG 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 325, 442
CviAII CATG 3 cut(s) 39, 112, 145
CviJI RGCY 4 cut(s) 126, 169, 190, 394
CviKI_1 RGCY 4 cut(s) 126, 169, 190, 394
CviQI GTAC 2 cut(s) 325, 442
DdeI CTNAG 2 cut(s) 282, 395
DpnI GATC 2 cut(s) 13, 254
DpnII GATC 2 cut(s) 11, 252
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 137, 392
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 42, 115, 148
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 45
FatI CATG 3 cut(s) 38, 111, 144
FauI CCCGC 1 cut(s) 137
FokI GGATG 4 cut(s) 94, 233, 276, 441
Hin1II CATG 3 cut(s) 42, 115, 148
HindIII AAGCTT 3 cut(s) 167, 188, 392
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 226, 250
HpyCH4IV ACGT 2 cut(s) 356, 451
HpyCH4V TGCA 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 282, 395
HpySE526I ACGT 2 cut(s) 356, 451
Hsp92II CATG 3 cut(s) 42, 115, 148
Kzo9I GATC 2 cut(s) 11, 252
LmnI GCTCC 2 cut(s) 131, 153
LpnPI CCDG 1 cut(s) 136
LweI GCATC 1 cut(s) 37
MaeII ACGT 2 cut(s) 356, 451
MalI GATC 2 cut(s) 13, 254
MboI GATC 2 cut(s) 11, 252
MboII GAAGA 5 cut(s) 21, 130, 385, 388, 424
MnlI CCTC 3 cut(s) 291, 343, 408
MseI TTAA 1 cut(s) 423
NdeII GATC 2 cut(s) 11, 252
NlaIII CATG 3 cut(s) 42, 115, 148
NlaIV GGNNCC 1 cut(s) 127
NspI RCATGY 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 91
RsaI GTAC 2 cut(s) 326, 443
RsaNI GTAC 2 cut(s) 325, 442
SaqAI TTAA 1 cut(s) 423
Sau3AI GATC 2 cut(s) 11, 252
Sau96I GGNCC 1 cut(s) 272
SetI ASST 7 cut(s) 171, 192, 283, 359, 396, 419, 454
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 272
SsiI CCGC 2 cut(s) 130, 458
StyI CCWWGG 1 cut(s) 345
TaiI ACGT 2 cut(s) 359, 454
TatI WGTACW 1 cut(s) 324
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 375
TspDTI ATGAA 3 cut(s) 17, 161, 191
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.