FvH4_6g36750

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Reverse (-)
28897877 .. 28900483
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36750.t1

Sequence Viewer

Length: 1452 bp
ATGGAAGTGGAAGAGAATGCAGCAGAGACATTGTTTGGGAAAAACAAAACAGTGACAAAAAAGTGTGTGATGGACGCTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGATGAAGAAAGAAGAAAGAAGATAAAAAATTTGGTTAGGTTGCTTATTTTAGAAATTTGCATAAAGTTTCTATTTGCAAATGGGGGAGGGAGTGTCTCAAATGAGCTGGTAAATGCAGTATGGGGGAACATACAGAGCTGTGGATGGGCTCAAGAGGTTAGAAGATTTTTGTCGGGTTGTTTAAGACAACGACTAAAATCAAAGGGTAAGGGGTTGAGCGGGTTGAACACAGGAGGCTGTGCACACTTAATTCTGTATTGGCTCTGTGAGAAGACAAACGCCATAAAGCCGGTTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTACCCAAGAATGCTGAATTCAAAACATTGAAGCAACTGTTCGCTGGAATCAAGTCTGATCCAGAAGAAACAGATTGTGAATCTGAAGCAGAAGAAGAAGAAACAGTGCAGAAGAAACTGATGGATAAAGAAGAAACATGGCAGGCAGCAGAGGAAGGAGAAAGGCCACCGTCCTCTCTAATATCCGGTCAAAGCCAAAAAGCAAAGGAGGTTGAAATGAGACGGCTAACAGAGGAGAACGAAAGGCTGCGCTGTCAAACTGAAAGCTTGAAAGAGGAAATGAGAAACATGGCAGAGGACTATGAATCAAGGCAGACAGAACTACAGGAGAAGATGGAAAATGCAGTACAGGATTTGATGATTGAGAGGTTAATTAACAATGAAACAAGGTTGCAGAATGAAAAACTCAATGAAGAACTGAAGAAGTTGCAAGCTTTGGTGGCGGCATTAGCACCAAACTCTCAAGATGAGAGAGCTCTGGAAAGCAATGAAGATGATCAGGATCCTGAAGGAGGAGCAAACGAGGGAGGAAAAAACAATGAAGATCTGAAGGACAAGGAAGCTGATAAGGCAGCTGAAAAAGATGATGATAAGGAAGCGGATAAGGATCCTGAAGGAACTGGCAAGGAAGATGAAGCAGCTGAGAAAATGGAGGAGGAGGAGAAAGATGCCAATGCTGAAGATAAGAGTGAGGCAGCAGCGAACATAGCTCAGCTTTCAATGCAAAATTCGGAAGAATTAGATCTTCAAGCATTAGAAGAGGTTGAGAGAGAGCTAAAAAAGAACATGGCCGATGAGGATGATAAAGAGAAGGAAGAGGCAACAGAGAAAGTTGCAAGCGCTCATAAAAAAGAGATGAGTGAGCCTCAGATTCCAACCCAAAATTCAGAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACGAAGGGTAATTCTCAAGAATTGAACTTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

484

Amino Acids

54.99

Weight (kDa)

4.66

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 3 cut(s) 330, 899, 1055
AclWI GGATC 5 cut(s) 509, 953, 966, 1058, 1071
AcoI YGGCCR 1 cut(s) 1245
AcsI RAATTY 5 cut(s) 139, 165, 473, 1183, 1339
AcuI CTGAAG 6 cut(s) 561, 896, 984, 1025, 1089, 1155
AfaI GTAC 1 cut(s) 804
AfeI AGCGCT 1 cut(s) 1297
AfiI CCNNNNNNNGG 2 cut(s) 407, 968
AjuI GAANNNNNNNTTGG 2 cut(s) 1324, 1356
Alw21I GWGCWC 3 cut(s) 90, 355, 934
Alw26I GTCTC 3 cut(s) 20, 211, 670
Alw44I GTGCAC 1 cut(s) 351
AlwI GGATC 5 cut(s) 509, 953, 966, 1058, 1071
Aor51HI AGCGCT 1 cut(s) 1297
AoxI GGCC 2 cut(s) 620, 1245
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 8 cut(s) 20, 100, 602, 703, 1028, 1094, 1151, 1154
ApoI RAATTY 5 cut(s) 139, 165, 473, 1183, 1339
AspLEI GCGC 2 cut(s) 708, 1298
AspS9I GGNCC 2 cut(s) 94, 445
AvaII GGWCC 2 cut(s) 94, 445
BaeGI GKGCMC 1 cut(s) 355
BamHI GGATCC 2 cut(s) 958, 1063
BanII GRGCYC 3 cut(s) 90, 262, 934
BbsI GAAGAC 2 cut(s) 389, 1353
Bbv12I GWGCWC 3 cut(s) 90, 355, 934
BbvI GCAGC 8 cut(s) 32, 112, 614, 690, 1040, 1106, 1163, 1166
BccI CCATC 4 cut(s) 64, 249, 571, 784
BceAI ACGGC 1 cut(s) 695
BclI TGATCA 1 cut(s) 952
BcoDI GTCTC 3 cut(s) 20, 211, 670
BfmI CTRYAG 1 cut(s) 779
BfoI RGCGCY 1 cut(s) 1299
BglII AGATCT 2 cut(s) 1000, 1198
BisI GCNGC 9 cut(s) 21, 101, 603, 704, 900, 1029, 1095, 1152, 1155
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 9 cut(s) 22, 102, 604, 705, 901, 1030, 1096, 1153, 1156
Bme18I GGWCC 2 cut(s) 94, 445
BmgT120I GGNCC 2 cut(s) 94, 445
BmiI GGNNCC 3 cut(s) 446, 960, 1065
BmsI GCATC 1 cut(s) 1114
BpiI GAAGAC 2 cut(s) 389, 1353
BplI GAGNNNNNCTC 2 cut(s) 1306, 1338
Bpu1102I GCTNAGC 1 cut(s) 1167
BpuEI CTTGAG 4 cut(s) 74, 246, 903, 1416
BsaBI GATNNNNATC 2 cut(s) 957, 1062
BsaWI WCCGGW 1 cut(s) 641
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 968
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 1081
Bse3DI GCAATG 1 cut(s) 949
Bse8I GATNNNNATC 2 cut(s) 957, 1062
BseGI GGATG 3 cut(s) 260, 424, 1261
BseJI GATNNNNATC 2 cut(s) 957, 1062
BseLI CCNNNNNNNGG 2 cut(s) 407, 968
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 3 cut(s) 1089, 1181, 1337
BseNI ACTGG 1 cut(s) 1081
BseRI GAGGAG 5 cut(s) 704, 984, 1124, 1127, 1130
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 8 cut(s) 32, 112, 614, 690, 1040, 1106, 1163, 1166
BsgI GTGCAG 1 cut(s) 584
BshFI GGCC 2 cut(s) 622, 1247
BsiHKAI GWGCWC 3 cut(s) 90, 355, 934
BsiSI CCGG 2 cut(s) 401, 642
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 407, 968
BsmAI GTCTC 3 cut(s) 20, 211, 670
BsmBI CGTCTC 1 cut(s) 670
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 2 cut(s) 22, 472
BsnI GGCC 2 cut(s) 622, 1247
Bsp1286I GDGCHC 4 cut(s) 90, 262, 355, 934
Bsp143I GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
Bsp1720I GCTNAGC 1 cut(s) 1167
BspACI CCGC 3 cut(s) 330, 899, 1055
BspANI GGCC 2 cut(s) 622, 1247
BspCNI CTCAG 3 cut(s) 1090, 1180, 1336
BspLI GGNNCC 3 cut(s) 446, 960, 1065
BspPI GGATC 5 cut(s) 509, 953, 966, 1058, 1071
BspQI GCTCTTC 1 cut(s) 1377
BsrBI CCGCTC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 949
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 1081
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
Bst4CI ACNGT 4 cut(s) 52, 495, 562, 627
Bst6I CTCTTC 4 cut(s) 6, 1209, 1266, 1377
BstC8I GCNNGC 3 cut(s) 600, 888, 1294
BstDEI CTNAG 3 cut(s) 1098, 1167, 1323
BstENI CCTNNNNNAGG 1 cut(s) 966
BstF5I GGATG 3 cut(s) 260, 424, 1261
BstH2I RGCGCY 1 cut(s) 1299
BstHHI GCGC 2 cut(s) 708, 1298
BstKTI GATC 6 cut(s) 517, 955, 961, 1003, 1066, 1201
BstMAI GTCTC 3 cut(s) 20, 211, 670
BstMBI GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 896, 905, 1025, 1163, 1177
BstSFI CTRYAG 1 cut(s) 779
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 8 cut(s) 32, 112, 614, 690, 1040, 1106, 1163, 1166
BstV2I GAAGAC 2 cut(s) 389, 1353
BstX2I RGATCY 4 cut(s) 958, 1000, 1063, 1198
BstYI RGATCY 4 cut(s) 958, 1000, 1063, 1198
BsuRI GGCC 2 cut(s) 622, 1247
BtsCI GGATG 3 cut(s) 260, 424, 1261
BtsIMutI CAGTG 2 cut(s) 57, 567
Cac8I GCNNGC 3 cut(s) 600, 888, 1294
CfoI GCGC 2 cut(s) 708, 1298
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 94, 445
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 803
CviAII CATG 3 cut(s) 594, 745, 1243
CviQI GTAC 1 cut(s) 803
DdeI CTNAG 3 cut(s) 1098, 1167, 1323
DpnI GATC 6 cut(s) 516, 954, 960, 1002, 1065, 1200
DpnII GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
EaeI YGGCCR 1 cut(s) 1245
Eam1104I CTCTTC 4 cut(s) 6, 1209, 1266, 1377
EarI CTCTTC 4 cut(s) 6, 1209, 1266, 1377
Ecl136II GAGCTC 2 cut(s) 88, 932
Eco24I GRGCYC 3 cut(s) 90, 262, 934
Eco47I GGWCC 2 cut(s) 94, 445
Eco47III AGCGCT 1 cut(s) 1297
Eco53kI GAGCTC 2 cut(s) 88, 932
Eco57I CTGAAG 6 cut(s) 561, 896, 984, 1025, 1089, 1155
EcoICRI GAGCTC 2 cut(s) 88, 932
EcoNI CCTNNNNNAGG 1 cut(s) 966
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 473
EcoT38I GRGCYC 3 cut(s) 90, 262, 934
Esp3I CGTCTC 1 cut(s) 670
FaeI CATG 3 cut(s) 597, 748, 1246
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 593, 744, 1242
FauI CCCGC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 9 cut(s) 21, 101, 603, 704, 900, 1029, 1095, 1152, 1155
FokI GGATG 3 cut(s) 267, 431, 1268
FriOI GRGCYC 3 cut(s) 90, 262, 934
Fsp4HI GCNGC 9 cut(s) 21, 101, 603, 704, 900, 1029, 1095, 1152, 1155
GlaI GCGC 2 cut(s) 707, 1297
GluI GCNGC 9 cut(s) 21, 101, 603, 704, 900, 1029, 1095, 1152, 1155
HaeII RGCGCY 1 cut(s) 1299
HaeIII GGCC 2 cut(s) 622, 1247
HapII CCGG 2 cut(s) 401, 642
HgaI GACGC 1 cut(s) 83
HhaI GCGC 2 cut(s) 708, 1298
Hin1II CATG 3 cut(s) 597, 748, 1246
Hin6I GCGC 2 cut(s) 706, 1296
HinP1I GCGC 2 cut(s) 706, 1296
HindIII AAGCTT 2 cut(s) 721, 888
HinfI GANTC 4 cut(s) 504, 536, 761, 1327
HpaII CCGG 2 cut(s) 401, 642
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 6 cut(s) 514, 541, 1005, 1189, 1326, 1345
Hpy188III TCNNGA 8 cut(s) 263, 518, 920, 935, 956, 962, 1067, 1433
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 7 cut(s) 401, 605, 959, 1000, 1064, 1261, 1414
HpyCH4III ACNGT 4 cut(s) 52, 495, 562, 627
HpyF10VI GCNNNNNNNGC 5 cut(s) 896, 905, 1025, 1163, 1177
HpyF3I CTNAG 3 cut(s) 1098, 1167, 1323
Hsp92II CATG 3 cut(s) 597, 748, 1246
HspAI GCGC 2 cut(s) 706, 1296
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
LguI GCTCTTC 1 cut(s) 1377
LmnI GCTCC 1 cut(s) 971
Lsp1109I GCAGC 8 cut(s) 32, 112, 614, 690, 1040, 1106, 1163, 1166
LweI GCATC 1 cut(s) 1114
MaeIII GTNAC 1 cut(s) 52
MalI GATC 6 cut(s) 516, 954, 960, 1002, 1065, 1200
MbiI CCGCTC 1 cut(s) 330
MboI GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
MflI RGATCY 4 cut(s) 958, 1000, 1063, 1198
MhlI GDGCHC 4 cut(s) 90, 262, 355, 934
MmeI TCCRAC 1 cut(s) 1355
MseI TTAA 6 cut(s) 80, 293, 359, 827, 831, 1389
MspA1I CMGCKG 2 cut(s) 1031, 1097
MspI CCGG 2 cut(s) 401, 642
Mva1269I GAATGC 2 cut(s) 22, 472
MwoI GCNNNNNNNGC 5 cut(s) 896, 905, 1025, 1163, 1177
NdeII GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
NlaIII CATG 3 cut(s) 597, 748, 1246
NlaIV GGNNCC 3 cut(s) 446, 960, 1065
NmuCI GTSAC 1 cut(s) 52
PacI TTAATTAA 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 1377
PctI GAATGC 2 cut(s) 22, 472
PfeI GAWTC 4 cut(s) 504, 536, 761, 1327
PkrI GCNGC 9 cut(s) 22, 102, 604, 705, 901, 1030, 1096, 1153, 1156
PpuMI RGGWCCY 1 cut(s) 445
Psp124BI GAGCTC 2 cut(s) 90, 934
Psp5II RGGWCCY 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 446, 960, 1065
PspPI GGNCC 2 cut(s) 94, 445
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 4 cut(s) 958, 1000, 1063, 1198
PvuII CAGCTG 2 cut(s) 1031, 1097
RsaI GTAC 1 cut(s) 804
RsaNI GTAC 1 cut(s) 803
SacI GAGCTC 2 cut(s) 90, 934
SapI GCTCTTC 1 cut(s) 1377
SaqAI TTAA 6 cut(s) 80, 293, 359, 827, 831, 1389
SatI GCNGC 9 cut(s) 21, 101, 603, 704, 900, 1029, 1095, 1152, 1155
Sau3AI GATC 6 cut(s) 514, 952, 958, 1000, 1063, 1198
Sau96I GGNCC 2 cut(s) 94, 445
SduI GDGCHC 4 cut(s) 90, 262, 355, 934
SfaNI GCATC 1 cut(s) 1114
SfcI CTRYAG 1 cut(s) 779
SinI GGWCC 2 cut(s) 94, 445
SmlI CTYRAG 4 cut(s) 89, 261, 918, 1431
SmoI CTYRAG 4 cut(s) 89, 261, 918, 1431
SsiI CCGC 3 cut(s) 330, 899, 1055
SstI GAGCTC 2 cut(s) 90, 934
TaaI ACNGT 4 cut(s) 52, 495, 562, 627
TatI WGTACW 1 cut(s) 802
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 4 cut(s) 504, 536, 761, 1327
Tru1I TTAA 6 cut(s) 80, 293, 359, 827, 831, 1389
Tru9I TTAA 6 cut(s) 80, 293, 359, 827, 831, 1389
TscAI CASTG 2 cut(s) 57, 567
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 8 cut(s) 20, 100, 602, 703, 1028, 1094, 1151, 1154
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 9 cut(s) 129, 774, 852, 870, 882, 960, 1011, 1104, 1428
TspRI CASTG 2 cut(s) 57, 567
VneI GTGCAC 1 cut(s) 351
VpaK11BI GGWCC 2 cut(s) 94, 445
XagI CCTNNNNNAGG 1 cut(s) 966
XapI RAATTY 5 cut(s) 139, 165, 473, 1183, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.