FvH4_7g09690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000274
Physical Location & Seq
Reverse (-)
9294044 .. 9295838
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09690.t1

Sequence Viewer

Length: 636 bp
ATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGCTGACGAAATTTCTCAGCAAGATTCTCAGTCTATCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCGATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACGTCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGGAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGCGTGAAAATGAGATACACAGTTTCCACTATCATAATAAAAAGAAACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.52

Weight (kDa)

8.95

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 133 - 197 4.9e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 2 cut(s) 117, 387
AciI CCGC 1 cut(s) 298
AclI AACGTT 1 cut(s) 524
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 305, 560
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 117, 387
AgsI TTSAA 2 cut(s) 410, 559
AluBI AGCT 5 cut(s) 53, 337, 358, 562, 633
AluI AGCT 5 cut(s) 53, 337, 358, 562, 633
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 135
AspA2I CCTAGG 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 589
AvaII GGWCC 1 cut(s) 440
AvrII CCTAGG 1 cut(s) 95
BanI GGYRCC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 450
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 255
BlnI CCTAGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 43, 295
Bpu10I CCTNAGC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 95, 513
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 387
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 95, 513
BseGI GGATG 2 cut(s) 255, 414
BseLI CCNNNNNNNGG 2 cut(s) 117, 387
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 80, 92, 464
BshNI GGYRCC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 117, 387
BsmFI GGGAC 1 cut(s) 444
Bsp143I GATC 1 cut(s) 420
BspACI CCGC 1 cut(s) 298
BspCNI CTCAG 3 cut(s) 79, 91, 463
BspLI GGNNCC 2 cut(s) 43, 295
BspMAI CTGCAG 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 95, 513
BssMI GATC 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 95, 513
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 66, 78, 450, 563
BstF5I GGATG 2 cut(s) 255, 414
BstKTI GATC 1 cut(s) 423
BstMBI GATC 1 cut(s) 420
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 3 cut(s) 21, 154, 283
BstSFI CTRYAG 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 255, 414
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 536
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 493
CviAII CATG 6 cut(s) 18, 117, 140, 151, 280, 313
CviJI RGCY 6 cut(s) 53, 294, 337, 358, 562, 633
CviKI_1 RGCY 6 cut(s) 53, 294, 337, 358, 562, 633
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 4 cut(s) 66, 78, 450, 563
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Eco130I CCWWGG 2 cut(s) 95, 513
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 305, 560
EcoT14I CCWWGG 2 cut(s) 95, 513
ErhI CCWWGG 2 cut(s) 95, 513
FaeI CATG 6 cut(s) 21, 120, 143, 154, 283, 316
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 444
FatI CATG 6 cut(s) 17, 116, 139, 150, 279, 312
FauI CCCGC 1 cut(s) 305
FokI GGATG 2 cut(s) 262, 401
FspBI CTAG 1 cut(s) 96
Hin1II CATG 6 cut(s) 21, 120, 143, 154, 283, 316
HindIII AAGCTT 3 cut(s) 335, 356, 560
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 589
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 394, 418
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4IV ACGT 2 cut(s) 457, 524
HpyCH4V TGCA 4 cut(s) 21, 106, 154, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 4 cut(s) 66, 78, 450, 563
HpySE526I ACGT 2 cut(s) 457, 524
Hsp92II CATG 6 cut(s) 21, 120, 143, 154, 283, 316
Kzo9I GATC 1 cut(s) 420
LguI GCTCTTC 1 cut(s) 575
LmnI GCTCC 2 cut(s) 299, 321
LpnPI CCDG 1 cut(s) 304
MaeI CTAG 1 cut(s) 96
MaeII ACGT 2 cut(s) 457, 524
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 5 cut(s) 128, 298, 553, 556, 592
MluCI AATT 1 cut(s) 60
MnlI CCTC 2 cut(s) 459, 511
MroXI GAANNNNTTC 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 420
NlaIII CATG 6 cut(s) 21, 120, 143, 154, 283, 316
NlaIV GGNNCC 2 cut(s) 43, 295
NspI RCATGY 3 cut(s) 21, 154, 283
PaeI GCATGC 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 74
PflMI CCANNNNNTGG 2 cut(s) 117, 387
Psp1406I AACGTT 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 43, 295
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 1 cut(s) 259
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 575
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 1 cut(s) 440
SetI ASST 8 cut(s) 55, 339, 360, 451, 460, 527, 564, 635
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 138
SphI GCATGC 1 cut(s) 21
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 298
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 2 cut(s) 95, 513
TaaI ACNGT 1 cut(s) 604
TaiI ACGT 2 cut(s) 460, 527
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 2 cut(s) 18, 543
TspDTI ATGAA 3 cut(s) 128, 329, 359
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 2 cut(s) 18, 543
Van91I CCANNNNNTGG 2 cut(s) 117, 387
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 60
XceI RCATGY 3 cut(s) 21, 154, 283
XmaJI CCTAGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.