Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000274

Physical Location & Seq

Genomic Coordinates Reverse (-)

4913938 .. 4914792

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGTCAAGTCCGTCTCTGACTTTGCATATTCACCGTCGGGGGCCGCCAAATCCACGACGAATCCAGGCTCAACTTGCCACAGAGGAACATCGCTCTCTTCCGCAAGATCATCCCTCCGCTCACCAAGTACTCGCCGGAGACCATTTTGCTGATTATGTGGAATCTGGTACTAATCTGGAGATGGTGAGCTCGAAATCGGCGACCACCGTAGAGAGTAGTTCTTGCGATTTCTGCAAGGAGCACTCTTCCTTTGCCATATGCAATGGGTGCCAAAAGGATGTCCCAGTGGTGCTCATAAGCTTTCGCAATTGTAGCCTTGATGCCAAAATCAAGACCAACATAGAGGCAAACAACAAGTTTGAATTTGATATTCCAAATTTGAGTAAAGTAGCAAACGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

135

Amino Acids

14.8

Weight (kDa)

6.36

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis	pycom02g10120
rosa_chinensis	RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata	RLG00000015279 RLG00000029539
rosa_multiflora	Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa	Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	122
AciI	CCGC	3 cut(s)	47, 104, 120
AcsI	RAATTY	2 cut(s)	365, 379
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	132, 172
AgsI	TTSAA	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	192, 303
AluI	AGCT	2 cut(s)	192, 303
Alw21I	GWGCWC	3 cut(s)	194, 246, 297
Alw26I	GTCTC	2 cut(s)	21, 135
AoxI	GGCC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	365, 379
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	26, 116, 199
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	3 cut(s)	194, 246, 297
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	21, 135
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 272
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	112, 286
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	194, 246, 297
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	21, 135
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	194, 246, 297
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	3 cut(s)	47, 104, 120
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	45, 272
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	38, 211
Bst6I	CTCTTC	2 cut(s)	105, 253
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	112, 286
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	21, 135
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 234, 270, 315
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	112, 286
BtsIMutI	CAGTG	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	131, 171
CviJI	RGCY	5 cut(s)	46, 71, 192, 303, 318
CviKI_1	RGCY	5 cut(s)	46, 71, 192, 303, 318
CviQI	GTAC	2 cut(s)	131, 171
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	105, 253
EarI	CTCTTC	2 cut(s)	105, 253
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	21
FaiI	YATR	6 cut(s)	30, 159, 260, 262, 299, 344
FaqI	GGGAC	1 cut(s)	269
FauNDI	CATATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	99, 293
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	2 cut(s)	63, 164
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	3 cut(s)	26, 116, 199
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	179, 334
Hpy99I	CGWCG	2 cut(s)	42, 63
HpyCH4III	ACNGT	2 cut(s)	38, 211
HpyCH4V	TGCA	3 cut(s)	28, 237, 264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 234, 270, 315
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	53, 80, 151, 153, 164, 300
LweI	GCATC	1 cut(s)	313
MalI	GATC	1 cut(s)	111
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	92, 240
MfeI	CAATTG	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	194, 246, 297
MluCI	AATT	3 cut(s)	310, 365, 379
MnlI	CCTC	3 cut(s)	79, 127, 340
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	77, 234, 270, 315
NdeI	CATATG	1 cut(s)	260
NdeII	GATC	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	45, 272
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	63, 164
PkrI	GCNGC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	45, 272
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	2 cut(s)	132, 172
RsaNI	GTAC	2 cut(s)	131, 171
SacI	GAGCTC	1 cut(s)	194
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	3 cut(s)	194, 246, 297
SetI	ASST	2 cut(s)	194, 305
SfaNI	GCATC	1 cut(s)	313
Sse9I	AATT	3 cut(s)	310, 365, 379
SsiI	CCGC	3 cut(s)	47, 104, 120
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	38, 211
TaqI	TCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	310, 365, 379
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	63, 164
TscAI	CASTG	1 cut(s)	294
TspRI	CASTG	1 cut(s)	294
XapI	RAATTY	2 cut(s)	365, 379
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.