Rh7DG244600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000274
Physical Location & Seq
Forward (+)
25229770 .. 25235655
5886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG244600.1

Sequence Viewer

Length: 372 bp
ATGCGGTCGTGGTTCTGTGATTCTACAGTCGAGCTCATCGAGTCGATTTGTTCTTGGGATCCTTTGAAGAGGCTAACAGCTGCACAAGCTCTTCGCCATCCTTTCTTCACTAGAGTCTACAAAGATTCACATATTACTAATTACTCAGCTAACAAGACCAAGCTCATTGATCGCGCCCTGCAGTTGGGATCGGTGCTTCTTAAGGCCGGTGAGCTCTCGGTGAGACAACGAGCCTCCAAGCACAACTCCATCGCCTGGGCTCTCCTTCTCGACCTCACCATCAAGGTTACTATAGCACCGTTAACACGCCAGAACCGAATGCTTGGAATGCAGTTGAGAAAAGAAAATGGAGTACGTTGCTTGTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

10.04

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 255
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 4
AclWI GGATC 3 cut(s) 53, 66, 196
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 184, 255
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 6 cut(s) 34, 80, 89, 149, 163, 214
AluI AGCT 6 cut(s) 34, 80, 89, 149, 163, 214
Alw21I GWGCWC 2 cut(s) 36, 216
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 3 cut(s) 53, 66, 196
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 221, 232, 268
BamHI GGATCC 1 cut(s) 58
BanII GRGCYC 3 cut(s) 36, 216, 262
Bbv12I GWGCWC 2 cut(s) 36, 216
BbvI GCAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 105, 257, 287
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 3 cut(s) 24, 179, 291
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 255
Bse118I RCCGGY 1 cut(s) 206
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 184, 255
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 36, 216
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 184, 255
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 2 cut(s) 324, 333
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 3 cut(s) 36, 216, 262
Bsp143I GATC 3 cut(s) 58, 169, 188
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 158
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 3 cut(s) 53, 66, 196
BspQI GCTCTTC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 58, 169, 188
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 28, 300
Bst6I CTCTTC 2 cut(s) 62, 96
BstAFI CTTAAG 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 3 cut(s) 61, 172, 191
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 3 cut(s) 58, 169, 188
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 86, 328
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 3 cut(s) 24, 179, 291
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 97
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 206
Csp6I GTAC 1 cut(s) 353
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 1 cut(s) 145
DpnI GATC 3 cut(s) 60, 171, 190
DpnII GATC 3 cut(s) 58, 169, 188
Eam1104I CTCTTC 2 cut(s) 62, 96
EarI CTCTTC 2 cut(s) 62, 96
Ecl136II GAGCTC 2 cut(s) 34, 214
Eco24I GRGCYC 3 cut(s) 36, 216, 262
Eco53kI GAGCTC 2 cut(s) 34, 214
EcoICRI GAGCTC 2 cut(s) 34, 214
EcoRII CCWGG 1 cut(s) 254
EcoT38I GRGCYC 3 cut(s) 36, 216, 262
FaiI YATR 2 cut(s) 132, 293
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 3 cut(s) 36, 216, 262
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 207
HhaI GCGC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 4 cut(s) 20, 41, 114, 125
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 1 cut(s) 207
HphI GGTGA 3 cut(s) 221, 232, 268
Hpy166II GTNNAC 2 cut(s) 118, 303
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 118, 303
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 28, 300
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 83, 181, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 328
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 355
HspAI GCGC 1 cut(s) 174
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 3 cut(s) 58, 169, 188
LguI GCTCTTC 1 cut(s) 96
LpnPI CCDG 5 cut(s) 191, 220, 241, 268, 323
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 60, 171, 190
MboI GATC 3 cut(s) 58, 169, 188
MboII GAAGA 3 cut(s) 79, 83, 97
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 3 cut(s) 36, 216, 262
MluCI AATT 2 cut(s) 139, 367
MlyI GAGTC 2 cut(s) 50, 123
MnlI CCTC 3 cut(s) 63, 244, 284
MseI TTAA 2 cut(s) 201, 302
MspA1I CMGCKG 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 2 cut(s) 324, 333
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 86, 328
NdeII GATC 3 cut(s) 58, 169, 188
NlaIV GGNNCC 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 313
PctI GAATGC 2 cut(s) 324, 333
PfeI GAWTC 2 cut(s) 20, 125
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 49, 122
PpsI GAGTC 2 cut(s) 49, 122
Psp124BI GAGCTC 2 cut(s) 36, 216
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SacI GAGCTC 2 cut(s) 36, 216
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 201, 302
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 58, 169, 188
SchI GAGTC 2 cut(s) 50, 123
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 3 cut(s) 36, 216, 262
SetI ASST 9 cut(s) 36, 82, 91, 151, 165, 216, 276, 288, 358
SfcI CTRYAG 3 cut(s) 24, 179, 291
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 139, 367
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 2 cut(s) 36, 216
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 28, 300
TaiI ACGT 1 cut(s) 358
TaqI TCGA 4 cut(s) 30, 39, 44, 270
TasI AATT 2 cut(s) 139, 367
TfiI GAWTC 2 cut(s) 20, 125
Tru1I TTAA 2 cut(s) 201, 302
Tru9I TTAA 2 cut(s) 201, 302
TseI GCWGC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 255
Vha464I CTTAAG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.