FvH4_4g04830

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000274
Physical Location & Seq
Forward (+)
4206785 .. 4213367
6583 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04830.t1

Sequence Viewer

Length: 3462 bp
ATGCTGGGACTTAGAGTTGAAATGGATAAGCGAAAAATGAACGCATTTAATGAAGAAGGAAAGAAGAGAAAGAGGATAGTTGATGAAGGAGCAAAGAGGAGAAAGAGGACAGTGGATGAAGAGGCTGATGGTGTACTGCTGTCCAAACTATTTCTGGGACAGGAAAAAAGAAGGAGAAAACAAGAGAAGAAAAATAAGATAGAGGAGCCAAAGAAGAAGAAGGCCTTGAAGAAGACATCTCAAATAGAGGAGGAGGAAGAAGAAGAAGATGAGACAGAGAAGAAGAAATCAAATCAGTTCAGATCAACATGGCCTGAAGTGGACAGTTTTAGAGAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCCCGTTTGGTTTACTTTTTGAAGGATTTTATGAGCATGTCAACAAAAAGCACTTTGGGAAGTCGAACAAGCTCATTGAAACAATCGCCGACACTTACAATGAAAAGCTTGATGCATTTGTGATCGGGGAAGGAATATACAGAATCACAAGCAGAGATGTATCTAAGATTCTAGGACTTCCTAGAAAAGGTGGCTCCTTTGAGACAATGGAAGTGGAAGAGAATGCAGCAGAGACATTATTTGGGAAAAACAAAAGAGTCACAAAAAAGTGTGTGATGGACGTTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGATGAAGAAAGAAGAATGAAGAGAAAAAATTTGGTTAGGCTGCTCATTTTAGAAATTTGCATAAAGTTTCTATTTGCAAATGGGGGAGGGAGTGTCTCAAATGAGCTGGTAAATGCAGTATGGGGGAACATACAGAGCTGTGGATGGGCTCAAGAGTATTGGCTCTGTGAGAAGACAAACGCCATAAAGTCGATTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTACCCAAGAATGCTGAATTCAAAACATTGAAGCAACTGTTCGCTGGAATCAAGTCTGATCCAGAAGAAACAGATTGTGAATCTGAAGCAGAAGAAGAAGAAACAGTGCAGAAGAAACTGATGGATAAAGAAGAAACATGGCAGGCAGCAGAGGAAGGAGAAAGGCCACCGTCCTCTCTAATATCCGGTCAAAGCCAAAAAGCAAAGGAGGTTGAAATGAGACGGCTAACAGAGGAGAACGAAAGGCTGCGCTGTCAAACTGAAAGCTTGAAAGAGGAAATGAGAAGCATGGCAGAGGACTATGAATCAAGGCAGACAGAACTACAGGAGAAGATGGAAAATGCAGTACAGGATTTGATGATTGAGAGGTTAATTAACAATGAAACAAGGTTGCAGAATGAAAAACTCAATGAAGAACTGAAGAAGTTGCAAGCTTTGGTGGCGGCATTAGCACCAAACTCTCAAGATGAGAGAGCTCTGGAAAGCAATGAAGATGATCAGGATCCTGAAGGAGGAGCAAACAAGGGAGGAAAAAACAATGAAGATCTGAAGGACAAGGAAGCTGATAAGGCAGCTGAAAAAGATGATGATAAGGAAGCGGATAAGGATCCTGAAGGAACTGGCAAGGAAGATGAAGCAGCTGAGAAAATGGAGGGGGAGGAGGAGAAAGATGCCAATGCTGAAGATAAGAGTGAGGCAGCAGCGAACATAGCTCAGCTTTCAATGCAAAATTCGGAAGAATTAGATCTTCAAGCATTAGAAGAGGTTGAGAGAGAGCTAAAAAAAAACATGGCCGATGAGGATGATAAAGAGAAGGAAGAGGCAACAGAGAAAGTTGCAAGCGCTCATAAAAAAGAGATGAGTGAGCCTCAGATTCCAACCCAAAATTCAGAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACGAAGGCTTACAGTGAGCAACCACCAGAGTCACCACCAAGGAGGACGGTTGCGGAAGAAGCGCGTTGGTCGCCGAAAGCACCGGTGACAGAGATGCCTTCTTTTGATTTGGGAATCTCTCCCTGGATATCTTGGAATAGCCCATTGGTGACTGGAATAATAACCATACCAGAGAAGAATTTCAATACTCCCTCTAGCCCTCAAATCATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTATCTCCACAAGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATTGAGATTGAGCTGACAGAGGAAAACTCTGGAAGGACAGCATCATCCTTGGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAGAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACGAGTATGGAGATGTAATTCATACTATTGGTGCTGATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCGAGAGCAATACGGGTTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGAGACTTCATATGGGAAGGCCCATTGTATGGTTCAGAGATTACAAAGCTTGATCTGCTGGAGGTTATAATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGCTGACGAAATTTCTCAGCAAGATTCTCAGTCTGTCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAAACCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCGATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACGTCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGGAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGCGTGAAAATGAGATACACAGTTTCCACTATCATAATAAAAAGAAACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

1154

Amino Acids

132.99

Weight (kDa)

5.17

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2699
Acc36I ACCTGC 1 cut(s) 2143
AccB1I GGYRCC 1 cut(s) 2741
AccB7I CCANNNNNTGG 3 cut(s) 2660, 2817, 3213
AccII CGCG 2 cut(s) 1963, 2516
AciI CCGC 6 cut(s) 1379, 1535, 1952, 2514, 2546, 3124
AclI AACGTT 1 cut(s) 3350
AclWI GGATC 8 cut(s) 989, 1433, 1446, 1538, 1551, 2291, 2576, 2589
AcoI YGGCCR 1 cut(s) 1728
AcsI RAATTY 7 cut(s) 718, 744, 953, 1666, 1822, 2077, 2760
AfaI GTAC 3 cut(s) 135, 1284, 3320
AfeI AGCGCT 1 cut(s) 1780
AfiI CCNNNNNNNGG 5 cut(s) 560, 1448, 2660, 2817, 3213
AgeI ACCGGT 1 cut(s) 1981
AjnI CCWGG 1 cut(s) 2021
AjuI GAANNNNNNNTTGG 4 cut(s) 1807, 1839, 2027, 2059
Alw21I GWGCWC 2 cut(s) 669, 1414
Alw26I GTCTC 6 cut(s) 266, 569, 599, 790, 1150, 2628
AlwI GGATC 8 cut(s) 989, 1433, 1446, 1538, 1551, 2291, 2576, 2589
AlwNI CAGNNNCTG 1 cut(s) 2177
Aor51HI AGCGCT 1 cut(s) 1780
AoxI GGCC 8 cut(s) 222, 311, 373, 1100, 1728, 2303, 2364, 2650
ApeKI GCWGC 9 cut(s) 599, 679, 730, 1082, 1183, 1508, 1574, 1634, 1637
ApoI RAATTY 7 cut(s) 718, 744, 953, 1666, 1822, 2077, 2760
AseI ATTAAT 1 cut(s) 2184
AsiGI ACCGGT 1 cut(s) 1981
Asp700I GAANNNNTTC 2 cut(s) 2078, 2835
AspA2I CCTAGG 1 cut(s) 2795
AspLEI GCGC 3 cut(s) 1188, 1781, 1963
AspS9I GGNCC 5 cut(s) 374, 673, 925, 2651, 3266
AsuHPI GGTGA 5 cut(s) 1923, 1996, 2059, 2930, 3415
AvaII GGWCC 3 cut(s) 673, 925, 3266
AvrII CCTAGG 1 cut(s) 2795
BamHI GGATCC 3 cut(s) 1438, 1543, 2581
BanI GGYRCC 1 cut(s) 2741
BanII GRGCYC 3 cut(s) 669, 841, 1414
BbsI GAAGAC 4 cut(s) 239, 869, 1836, 2947
Bbv12I GWGCWC 2 cut(s) 669, 1414
BbvCI CCTCAGC 1 cut(s) 3276
BbvI GCAGC 9 cut(s) 611, 691, 717, 1094, 1170, 1520, 1586, 1646, 1649
BccI CCATC 7 cut(s) 122, 643, 828, 1051, 1264, 2116, 3008
BceAI ACGGC 1 cut(s) 1175
BciT130I CCWGG 1 cut(s) 2023
BclI TGATCA 1 cut(s) 1432
BcoDI GTCTC 6 cut(s) 266, 569, 599, 790, 1150, 2628
BfaI CTAG 6 cut(s) 545, 555, 2094, 2189, 2796, 2987
BfmI CTRYAG 2 cut(s) 1259, 3081
BfoI RGCGCY 1 cut(s) 1782
BfuAI ACCTGC 1 cut(s) 2143
BglII AGATCT 2 cut(s) 1480, 1681
BlnI CCTAGG 1 cut(s) 2795
BlpI GCTNAGC 1 cut(s) 1650
Bme1390I CCNGG 1 cut(s) 2023
Bme18I GGWCC 3 cut(s) 673, 925, 3266
BmgT120I GGNCC 5 cut(s) 374, 673, 925, 2651, 3266
BmiI GGNNCC 9 cut(s) 207, 568, 926, 1440, 1545, 2484, 2583, 2743, 3121
BmrFI CCNGG 1 cut(s) 2023
BmsI GCATC 5 cut(s) 475, 1597, 1983, 2258, 3031
BpiI GAAGAC 4 cut(s) 239, 869, 1836, 2947
BplI GAGNNNNNCTC 4 cut(s) 1789, 1821, 2219, 2251
BpmI CTGGAG 2 cut(s) 2420, 2711
Bpu10I CCTNAGC 1 cut(s) 3276
Bpu1102I GCTNAGC 1 cut(s) 1650
BpuEI CTTGAG 3 cut(s) 653, 825, 1383
BsaBI GATNNNNATC 2 cut(s) 1437, 1542
BsaJI CCNNGG 5 cut(s) 1937, 2021, 2256, 2795, 3339
BsaWI WCCGGW 2 cut(s) 1121, 1981
BsaXI ACNNNNNCTCC 4 cut(s) 768, 798, 3335, 3365
Bsc4I CCNNNNNNNGG 5 cut(s) 560, 1448, 2660, 2817, 3213
Bse118I RCCGGY 2 cut(s) 1981, 2305
Bse1I ACTGG 3 cut(s) 1561, 2056, 2333
Bse3DI GCAATG 2 cut(s) 1429, 2728
Bse8I GATNNNNATC 2 cut(s) 1437, 1542
BseBI CCWGG 1 cut(s) 2023
BseDI CCNNGG 5 cut(s) 1937, 2021, 2256, 2795, 3339
BseGI GGATG 8 cut(s) 121, 839, 904, 1744, 2252, 2268, 3081, 3240
BseJI GATNNNNATC 2 cut(s) 1437, 1542
BseLI CCNNNNNNNGG 5 cut(s) 560, 1448, 2660, 2817, 3213
BseMI GCAATG 2 cut(s) 1429, 2728
BseMII CTCAG 8 cut(s) 356, 1569, 1664, 1820, 2552, 2780, 2792, 3290
BseNI ACTGG 3 cut(s) 1561, 2056, 2333
BseRI GAGGAG 9 cut(s) 112, 218, 263, 266, 1184, 1464, 1610, 1613, 2213
BseXI GCAGC 9 cut(s) 611, 691, 717, 1094, 1170, 1520, 1586, 1646, 1649
BseYI CCCAGC 2 cut(s) 4, 2613
BsgI GTGCAG 1 cut(s) 1064
Bsh1236I CGCG 2 cut(s) 1963, 2516
BshFI GGCC 8 cut(s) 224, 313, 375, 1102, 1730, 2305, 2366, 2652
BshNI GGYRCC 1 cut(s) 2741
BshTI ACCGGT 1 cut(s) 1981
BsiHKAI GWGCWC 2 cut(s) 669, 1414
BsiSI CCGG 3 cut(s) 1122, 1982, 2306
BslFI GGGAC 5 cut(s) 21, 171, 938, 3039, 3270
BslI CCNNNNNNNGG 5 cut(s) 560, 1448, 2660, 2817, 3213
BsmAI GTCTC 6 cut(s) 266, 569, 599, 790, 1150, 2628
BsmBI CGTCTC 1 cut(s) 1150
BsmFI GGGAC 5 cut(s) 21, 171, 938, 3039, 3270
BsmI GAATGC 3 cut(s) 601, 952, 2567
BsnI GGCC 8 cut(s) 224, 313, 375, 1102, 1730, 2305, 2366, 2652
Bsp1286I GDGCHC 3 cut(s) 669, 841, 1414
Bsp1720I GCTNAGC 1 cut(s) 1650
BspACI CCGC 6 cut(s) 1379, 1535, 1952, 2514, 2546, 3124
BspANI GGCC 8 cut(s) 224, 313, 375, 1102, 1730, 2305, 2366, 2652
BspCNI CTCAG 8 cut(s) 357, 1570, 1663, 1819, 2551, 2779, 2791, 3289
BspFNI CGCG 2 cut(s) 1963, 2516
BspLI GGNNCC 9 cut(s) 207, 568, 926, 1440, 1545, 2484, 2583, 2743, 3121
BspMAI CTGCAG 1 cut(s) 3085
BspMI ACCTGC 1 cut(s) 2143
BspPI GGATC 8 cut(s) 989, 1433, 1446, 1538, 1551, 2291, 2576, 2589
BspQI GCTCTTC 2 cut(s) 1860, 3401
BspT107I GGYRCC 1 cut(s) 2741
BsrDI GCAATG 2 cut(s) 1429, 2728
BsrFI RCCGGY 2 cut(s) 1981, 2305
BsrI ACTGG 3 cut(s) 1561, 2056, 2333
BssAI RCCGGY 2 cut(s) 1981, 2305
BssECI CCNNGG 5 cut(s) 1937, 2021, 2256, 2795, 3339
BssT1I CCWWGG 4 cut(s) 1937, 2256, 2795, 3339
Bst2UI CCWGG 1 cut(s) 2023
Bst4CI ACNGT 8 cut(s) 112, 326, 975, 1042, 1107, 1913, 1948, 3430
Bst6I CTCTTC 9 cut(s) 59, 114, 585, 704, 1692, 1749, 1860, 2190, 3401
BstC8I GCNNGC 5 cut(s) 1080, 1368, 1777, 2307, 2719
BstENI CCTNNNNNAGG 2 cut(s) 558, 1446
BstF5I GGATG 8 cut(s) 121, 839, 904, 1744, 2252, 2268, 3081, 3240
BstFNI CGCG 2 cut(s) 1963, 2516
BstH2I RGCGCY 1 cut(s) 1782
BstHHI GCGC 3 cut(s) 1188, 1781, 1963
BstMAI GTCTC 6 cut(s) 266, 569, 599, 790, 1150, 2628
BstNI CCWGG 1 cut(s) 2023
BstNSI RCATGY 4 cut(s) 413, 2721, 2854, 3109
BstSCI CCNGG 1 cut(s) 2021
BstSFI CTRYAG 2 cut(s) 1259, 3081
BstUI CGCG 2 cut(s) 1963, 2516
BstV1I GCAGC 9 cut(s) 611, 691, 717, 1094, 1170, 1520, 1586, 1646, 1649
BstV2I GAAGAC 4 cut(s) 239, 869, 1836, 2947
BstX2I RGATCY 5 cut(s) 1438, 1480, 1543, 1681, 2581
BstXI CCANNNNNNTGG 2 cut(s) 3052, 3295
BstYI RGATCY 5 cut(s) 1438, 1480, 1543, 1681, 2581
BsuRI GGCC 8 cut(s) 224, 313, 375, 1102, 1730, 2305, 2366, 2652
BtsCI GGATG 8 cut(s) 121, 839, 904, 1744, 2252, 2268, 3081, 3240
BtsI GCAGTG 1 cut(s) 2718
BtsIMutI CAGTG 6 cut(s) 117, 353, 1047, 1918, 2718, 3362
BveI ACCTGC 1 cut(s) 2143
Cac8I GCNNGC 5 cut(s) 1080, 1368, 1777, 2307, 2719
CaiI CAGNNNCTG 1 cut(s) 2177
CfoI GCGC 3 cut(s) 1188, 1781, 1963
Cfr10I RCCGGY 2 cut(s) 1981, 2305
Cfr13I GGNCC 5 cut(s) 374, 673, 925, 2651, 3266
Csp6I GTAC 3 cut(s) 134, 1283, 3319
CspAI ACCGGT 1 cut(s) 1981
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviQI GTAC 3 cut(s) 134, 1283, 3319
EaeI YGGCCR 1 cut(s) 1728
Eam1104I CTCTTC 9 cut(s) 59, 114, 585, 704, 1692, 1749, 1860, 2190, 3401
EarI CTCTTC 9 cut(s) 59, 114, 585, 704, 1692, 1749, 1860, 2190, 3401
Ecl136II GAGCTC 2 cut(s) 667, 1412
Eco130I CCWWGG 4 cut(s) 1937, 2256, 2795, 3339
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 3 cut(s) 669, 841, 1414
Eco32I GATATC 1 cut(s) 2028
Eco47I GGWCC 3 cut(s) 673, 925, 3266
Eco47III AGCGCT 1 cut(s) 1780
Eco53kI GAGCTC 2 cut(s) 667, 1412
EcoICRI GAGCTC 2 cut(s) 667, 1412
EcoNI CCTNNNNNAGG 2 cut(s) 558, 1446
EcoO109I RGGNCCY 1 cut(s) 925
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 2021
EcoRV GATATC 1 cut(s) 2028
EcoT14I CCWWGG 4 cut(s) 1937, 2256, 2795, 3339
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 3 cut(s) 669, 841, 1414
ErhI CCWWGG 4 cut(s) 1937, 2256, 2795, 3339
Esp3I CGTCTC 1 cut(s) 1150
FalI AAGNNNNNCTT 4 cut(s) 209, 241, 3168, 3200
FaqI GGGAC 5 cut(s) 21, 171, 938, 3039, 3270
FauI CCCGC 1 cut(s) 3131
FauNDI CATATG 2 cut(s) 2272, 2642
FbaI TGATCA 1 cut(s) 1432
FokI GGATG 8 cut(s) 128, 846, 911, 1751, 2239, 2275, 3088, 3227
FriOI GRGCYC 3 cut(s) 669, 841, 1414
FspBI CTAG 6 cut(s) 545, 555, 2094, 2189, 2796, 2987
GlaI GCGC 3 cut(s) 1187, 1780, 1962
GsaI CCCAGC 2 cut(s) 8, 2617
GsuI CTGGAG 2 cut(s) 2420, 2711
HaeII RGCGCY 1 cut(s) 1782
HaeIII GGCC 8 cut(s) 224, 313, 375, 1102, 1730, 2305, 2366, 2652
HapII CCGG 3 cut(s) 1122, 1982, 2306
HhaI GCGC 3 cut(s) 1188, 1781, 1963
Hin6I GCGC 3 cut(s) 1186, 1779, 1961
HinP1I GCGC 3 cut(s) 1186, 1779, 1961
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 8 cut(s) 479, 1201, 1368, 2620, 2678, 3161, 3182, 3386
HpaII CCGG 3 cut(s) 1122, 1982, 2306
HphI GGTGA 5 cut(s) 1923, 1996, 2059, 2930, 3415
Hpy166II GTNNAC 4 cut(s) 134, 322, 386, 415
Hpy8I GTNNAC 4 cut(s) 134, 322, 386, 415
Hpy99I CGWCG 1 cut(s) 2902
HpyCH4III ACNGT 8 cut(s) 112, 326, 975, 1042, 1107, 1913, 1948, 3430
HpyCH4IV ACGT 3 cut(s) 654, 3283, 3350
HpySE526I ACGT 3 cut(s) 654, 3283, 3350
HspAI GCGC 3 cut(s) 1186, 1779, 1961
KroI GCCGGC 1 cut(s) 2305
KroNI GCCGGC 1 cut(s) 2307
Ksp22I TGATCA 1 cut(s) 1432
LguI GCTCTTC 2 cut(s) 1860, 3401
LmnI GCTCC 7 cut(s) 89, 205, 572, 1451, 2401, 3125, 3147
Lsp1109I GCAGC 9 cut(s) 611, 691, 717, 1094, 1170, 1520, 1586, 1646, 1649
LweI GCATC 5 cut(s) 475, 1597, 1983, 2258, 3031
MaeI CTAG 6 cut(s) 545, 555, 2094, 2189, 2796, 2987
MaeII ACGT 3 cut(s) 654, 3283, 3350
MaeIII GTNAC 4 cut(s) 631, 1929, 1984, 2047
MflI RGATCY 5 cut(s) 1438, 1480, 1543, 1681, 2581
MhlI GDGCHC 3 cut(s) 669, 841, 1414
MlyI GAGTC 3 cut(s) 639, 1937, 2530
MmeI TCCRAC 1 cut(s) 1838
Mph1103I ATGCAT 1 cut(s) 490
MroNI GCCGGC 1 cut(s) 2305
MroXI GAANNNNTTC 2 cut(s) 2078, 2835
MseI TTAA 7 cut(s) 48, 659, 1307, 1311, 1872, 2184, 2343
MslI CAYNNNNRTG 2 cut(s) 2572, 2838
MspA1I CMGCKG 2 cut(s) 1511, 1577
MspI CCGG 3 cut(s) 1122, 1982, 2306
MspR9I CCNGG 1 cut(s) 2023
Mva1269I GAATGC 3 cut(s) 601, 952, 2567
MvaI CCWGG 1 cut(s) 2023
MvnI CGCG 2 cut(s) 1963, 2516
NaeI GCCGGC 1 cut(s) 2307
NdeI CATATG 2 cut(s) 2272, 2642
NgoMIV GCCGGC 1 cut(s) 2305
NlaIV GGNNCC 9 cut(s) 207, 568, 926, 1440, 1545, 2484, 2583, 2743, 3121
NmuCI GTSAC 4 cut(s) 631, 1929, 1984, 2047
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 4 cut(s) 413, 2721, 2854, 3109
PacI TTAATTAA 1 cut(s) 1311
PaeI GCATGC 1 cut(s) 2721
PceI AGGCCT 1 cut(s) 224
PciSI GCTCTTC 2 cut(s) 1860, 3401
PctI GAATGC 3 cut(s) 601, 952, 2567
PdiI GCCGGC 1 cut(s) 2307
PdmI GAANNNNTTC 2 cut(s) 2078, 2835
PfeI GAWTC 9 cut(s) 516, 541, 984, 1016, 1241, 1810, 2013, 2774, 2990
PflMI CCANNNNNTGG 3 cut(s) 2660, 2817, 3213
PinAI ACCGGT 1 cut(s) 1981
PleI GAGTC 3 cut(s) 638, 1936, 2530
PpsI GAGTC 3 cut(s) 638, 1936, 2530
PpuMI RGGWCCY 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 2184
PsiI TTATAA 1 cut(s) 2699
Psp124BI GAGCTC 2 cut(s) 669, 1414
Psp1406I AACGTT 1 cut(s) 3350
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 1 cut(s) 2021
PspFI CCCAGC 2 cut(s) 4, 2613
PspGI CCWGG 1 cut(s) 2021
PspN4I GGNNCC 9 cut(s) 207, 568, 926, 1440, 1545, 2484, 2583, 2743, 3121
PspPI GGNCC 5 cut(s) 374, 673, 925, 2651, 3266
PspPPI RGGWCCY 1 cut(s) 925
PstI CTGCAG 1 cut(s) 3085
PstNI CAGNNNCTG 1 cut(s) 2177
PsuI RGATCY 5 cut(s) 1438, 1480, 1543, 1681, 2581
PvuII CAGCTG 2 cut(s) 1511, 1577
RsaI GTAC 3 cut(s) 135, 1284, 3320
RsaNI GTAC 3 cut(s) 134, 1283, 3319
RseI CAYNNNNRTG 2 cut(s) 2572, 2838
SacI GAGCTC 2 cut(s) 669, 1414
SapI GCTCTTC 2 cut(s) 1860, 3401
SaqAI TTAA 7 cut(s) 48, 659, 1307, 1311, 1872, 2184, 2343
Sau96I GGNCC 5 cut(s) 374, 673, 925, 2651, 3266
SchI GAGTC 3 cut(s) 639, 1937, 2530
ScrFI CCNGG 1 cut(s) 2023
SduI GDGCHC 3 cut(s) 669, 841, 1414
SfaNI GCATC 5 cut(s) 475, 1597, 1983, 2258, 3031
SfcI CTRYAG 2 cut(s) 1259, 3081
SgrAI CRCCGGYG 1 cut(s) 1981
SinI GGWCC 3 cut(s) 673, 925, 3266
SmiMI CAYNNNNRTG 2 cut(s) 2572, 2838
SmlI CTYRAG 3 cut(s) 668, 840, 1398
SmoI CTYRAG 3 cut(s) 668, 840, 1398
SphI GCATGC 1 cut(s) 2721
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 6 cut(s) 1379, 1535, 1952, 2514, 2546, 3124
SspMI CTAG 6 cut(s) 545, 555, 2094, 2189, 2796, 2987
SstI GAGCTC 2 cut(s) 669, 1414
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 2021
StyI CCWWGG 4 cut(s) 1937, 2256, 2795, 3339
TaaI ACNGT 8 cut(s) 112, 326, 975, 1042, 1107, 1913, 1948, 3430
TaiI ACGT 3 cut(s) 657, 3286, 3353
TaqI TCGA 2 cut(s) 437, 881
TatI WGTACW 3 cut(s) 133, 1282, 3318
TauI GCSGC 1 cut(s) 1382
TfiI GAWTC 9 cut(s) 516, 541, 984, 1016, 1241, 1810, 2013, 2774, 2990
Tru1I TTAA 7 cut(s) 48, 659, 1307, 1311, 1872, 2184, 2343
Tru9I TTAA 7 cut(s) 48, 659, 1307, 1311, 1872, 2184, 2343
TscAI CASTG 6 cut(s) 117, 360, 1047, 1918, 2718, 3369
TseFI GTSAC 4 cut(s) 631, 1929, 1984, 2047
TseI GCWGC 9 cut(s) 599, 679, 730, 1082, 1183, 1508, 1574, 1634, 1637
Tsp45I GTSAC 4 cut(s) 631, 1929, 1984, 2047
TspGWI ACGGA 2 cut(s) 2646, 3203
TspRI CASTG 6 cut(s) 117, 360, 1047, 1918, 2718, 3369
Van91I CCANNNNNTGG 3 cut(s) 2660, 2817, 3213
VpaK11BI GGWCC 3 cut(s) 673, 925, 3266
VspI ATTAAT 1 cut(s) 2184
XagI CCTNNNNNAGG 2 cut(s) 558, 1446
XapI RAATTY 7 cut(s) 718, 744, 953, 1666, 1822, 2077, 2760
XbaI TCTAGA 1 cut(s) 2188
XceI RCATGY 4 cut(s) 413, 2721, 2854, 3109
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmaJI CCTAGG 1 cut(s) 2795
XmnI GAANNNNTTC 2 cut(s) 2078, 2835
XspI CTAG 6 cut(s) 545, 555, 2094, 2189, 2796, 2987
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.