FvH4_6g22011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Forward (+)
15709021 .. 15711159
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22011.t1

Sequence Viewer

Length: 1164 bp
ATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTATCTCCACAGGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATTGAGATTGAGCTGACAGAGGAAAACTCTGGAAGGACAGCATCATCCTTGGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAGAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACGAGTATGGAGATGTAATTCATACTATTGGTGCTGATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCGAGAGCAATACGGGTTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGAGACTTCATATGGGAAGGCCCATTGTATGGTTCAGAGATTACAAAGCTTGATCTGCTGGAGGTTATAATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGCTGACGAAATTTCTCAGCAAGATTCTCAGTCTGTCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAACCCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGTTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCAATCAGTTGTCAAATAAATGGACCACTACCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.88

Weight (kDa)

6.25

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 623
AccB7I CCANNNNNTGG 3 cut(s) 542, 699, 1095
AccII CGCG 1 cut(s) 398
AciI CCGC 3 cut(s) 396, 428, 1006
AclWI GGATC 3 cut(s) 173, 458, 471
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 2 cut(s) 324, 1013
AfiI CCNNNNNNNGG 3 cut(s) 542, 699, 1095
AgsI TTSAA 4 cut(s) 454, 848, 876, 1118
AluBI AGCT 6 cut(s) 103, 302, 504, 562, 635, 1066
AluI AGCT 6 cut(s) 103, 302, 504, 562, 635, 1066
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 3 cut(s) 173, 458, 471
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 3 cut(s) 185, 246, 532
ApoI RAATTY 1 cut(s) 642
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 717
AspA2I CCTAGG 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 533, 1148
AsuHPI GGTGA 1 cut(s) 812
AvaII GGWCC 1 cut(s) 1148
AvrII CCTAGG 1 cut(s) 677
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 829
BccI CCATC 1 cut(s) 890
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 3 cut(s) 71, 678, 869
BfmI CTRYAG 1 cut(s) 963
BfuAI ACCTGC 1 cut(s) 25
BlnI CCTAGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 1148
BmgT120I GGNCC 2 cut(s) 533, 1148
BmiI GGNNCC 4 cut(s) 366, 465, 625, 1003
BmsI GCATC 2 cut(s) 140, 913
BpiI GAAGAC 1 cut(s) 829
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 2 cut(s) 302, 593
BsaJI CCNNGG 2 cut(s) 138, 677
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 699, 1095
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 138, 677
BseGI GGATG 4 cut(s) 134, 150, 963, 1122
BseLI CCNNNNNNNGG 3 cut(s) 542, 699, 1095
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 3 cut(s) 434, 662, 674
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 3 cut(s) 187, 248, 534
BshNI GGYRCC 1 cut(s) 623
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 3 cut(s) 542, 699, 1095
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 3 cut(s) 187, 248, 534
Bsp143I GATC 5 cut(s) 33, 165, 463, 565, 887
BspACI CCGC 3 cut(s) 396, 428, 1006
BspANI GGCC 3 cut(s) 187, 248, 534
BspCNI CTCAG 3 cut(s) 433, 661, 673
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 4 cut(s) 366, 465, 625, 1003
BspMAI CTGCAG 1 cut(s) 967
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 3 cut(s) 173, 458, 471
BspT107I GGYRCC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 138, 677
BssMI GATC 5 cut(s) 33, 165, 463, 565, 887
BssT1I CCWWGG 2 cut(s) 138, 677
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 189, 601
BstDEI CTNAG 5 cut(s) 420, 505, 648, 660, 1158
BstF5I GGATG 4 cut(s) 134, 150, 963, 1122
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 5 cut(s) 36, 168, 466, 568, 890
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 5 cut(s) 33, 165, 463, 565, 887
BstMWI GCNNNNNNNGC 4 cut(s) 184, 501, 568, 632
BstNSI RCATGY 3 cut(s) 603, 736, 991
BstSFI CTRYAG 1 cut(s) 963
BstUI CGCG 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 934
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 3 cut(s) 187, 248, 534
BtsCI GGATG 4 cut(s) 134, 150, 963, 1122
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 189, 601
CaiI CAGNNNCTG 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 533, 1148
CviAII CATG 8 cut(s) 460, 600, 699, 722, 733, 915, 988, 1021
DdeI CTNAG 5 cut(s) 420, 505, 648, 660, 1158
DpnI GATC 5 cut(s) 35, 167, 465, 567, 889
DpnII GATC 5 cut(s) 33, 165, 463, 565, 887
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 138, 677
Eco47I GGWCC 1 cut(s) 1148
Eco57I CTGAAG 2 cut(s) 324, 1013
EcoT14I CCWWGG 2 cut(s) 138, 677
ErhI CCWWGG 2 cut(s) 138, 677
FaeI CATG 8 cut(s) 463, 603, 702, 725, 736, 918, 991, 1024
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 1 cut(s) 921
FatI CATG 8 cut(s) 459, 599, 698, 721, 732, 914, 987, 1020
FauI CCCGC 1 cut(s) 1013
FauNDI CATATG 2 cut(s) 154, 524
FokI GGATG 4 cut(s) 121, 157, 970, 1109
FspBI CTAG 3 cut(s) 71, 678, 869
GsaI CCCAGC 1 cut(s) 499
GsuI CTGGAG 2 cut(s) 302, 593
HaeIII GGCC 3 cut(s) 187, 248, 534
HapII CCGG 1 cut(s) 188
Hin1II CATG 8 cut(s) 463, 603, 702, 725, 736, 918, 991, 1024
HindIII AAGCTT 3 cut(s) 502, 560, 1064
HinfI GANTC 3 cut(s) 418, 656, 872
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 812
Hpy188I TCNGA 4 cut(s) 165, 423, 550, 1039
Hpy188III TCNNGA 5 cut(s) 71, 120, 169, 281, 1102
Hpy99I CGWCG 1 cut(s) 784
HpyAV CCTTC 8 cut(s) 117, 177, 238, 299, 418, 524, 720, 874
HpyCH4V TGCA 6 cut(s) 20, 459, 603, 688, 736, 965
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 501, 568, 632
HpyF3I CTNAG 5 cut(s) 420, 505, 648, 660, 1158
Hsp92II CATG 8 cut(s) 463, 603, 702, 725, 736, 918, 991, 1024
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 5 cut(s) 33, 165, 463, 565, 887
LmnI GCTCC 3 cut(s) 283, 1007, 1029
LweI GCATC 2 cut(s) 140, 913
MaeI CTAG 3 cut(s) 71, 678, 869
MalI GATC 5 cut(s) 35, 167, 465, 567, 889
MboI GATC 5 cut(s) 33, 165, 463, 565, 887
MflI RGATCY 1 cut(s) 463
MluCI AATT 2 cut(s) 336, 642
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 4 cut(s) 73, 103, 214, 568
MroNI GCCGGC 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 2 cut(s) 66, 225
MslI CAYNNNNRTG 2 cut(s) 454, 720
MspI CCGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 449
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 4 cut(s) 184, 501, 568, 632
NaeI GCCGGC 1 cut(s) 189
NdeI CATATG 2 cut(s) 154, 524
NdeII GATC 5 cut(s) 33, 165, 463, 565, 887
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 8 cut(s) 463, 603, 702, 725, 736, 918, 991, 1024
NlaIV GGNNCC 4 cut(s) 366, 465, 625, 1003
NspI RCATGY 3 cut(s) 603, 736, 991
PaeI GCATGC 1 cut(s) 603
PctI GAATGC 1 cut(s) 449
PdiI GCCGGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 656, 872
PflMI CCANNNNNTGG 3 cut(s) 542, 699, 1095
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 495
PspN4I GGNNCC 4 cut(s) 366, 465, 625, 1003
PspPI GGNCC 2 cut(s) 533, 1148
PstI CTGCAG 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 463
RseI CAYNNNNRTG 2 cut(s) 454, 720
SaqAI TTAA 2 cut(s) 66, 225
Sau3AI GATC 5 cut(s) 33, 165, 463, 565, 887
Sau96I GGNCC 2 cut(s) 533, 1148
SchI GAGTC 1 cut(s) 412
SfaNI GCATC 2 cut(s) 140, 913
SfcI CTRYAG 1 cut(s) 963
SinI GGWCC 1 cut(s) 1148
SmiMI CAYNNNNRTG 2 cut(s) 454, 720
SphI GCATGC 1 cut(s) 603
Sse9I AATT 2 cut(s) 336, 642
SsiI CCGC 3 cut(s) 396, 428, 1006
SspMI CTAG 3 cut(s) 71, 678, 869
StyI CCWWGG 2 cut(s) 138, 677
TasI AATT 2 cut(s) 336, 642
TfiI GAWTC 2 cut(s) 656, 872
Tru1I TTAA 2 cut(s) 66, 225
Tru9I TTAA 2 cut(s) 66, 225
TscAI CASTG 1 cut(s) 600
TspDTI ATGAA 9 cut(s) 90, 141, 329, 372, 511, 710, 893, 1037, 1067
TspGWI ACGGA 2 cut(s) 528, 1085
TspRI CASTG 1 cut(s) 600
Van91I CCANNNNNTGG 3 cut(s) 542, 699, 1095
VpaK11BI GGWCC 1 cut(s) 1148
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 642
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 3 cut(s) 603, 736, 991
XmaJI CCTAGG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 3 cut(s) 71, 678, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.