Rmu_sc0011497.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011497.1
OG0000274
Physical Location & Seq
Forward (+)
28203 .. 29576
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011497.1_g000007.1.cds

Sequence Viewer

Length: 555 bp
atggtagcacaacagaatttggatggtttactcgaggatgttctaaaagcaataagagagatcgacgctaaagaaaaagtagaaatcaatgaaaagccagaagagaaacagctccctcctaaggttatagactgggagaagagcaaagtagtgttcttctgggtaggcaggcgctatggagcggaggtatccagacaggatctgaaggacatgataatggatgaacctatagcaagcaactgcatagaatgctatgggattctgttaactgatcaactatcagacaaagaatcacagggtctggaggtgccatcttttatgcatcccttatgctggattgaattggtagagctttggatgacagtagtcaaacaacaagtagatgacatgctagaccaaggatgccgaatgaaattcgatgaaaagaatagctcggaagaagaattgaaactgatcgaagttcccctgactgaaaatgagatagaaagcatcaaatggatcagggataactatgatggaaaaatggaagtgaaagacattaaaagctgcccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.45

Weight (kDa)

4.53

Isoelectric Point (pI)

59.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 207, 506
AcsI RAATTY 2 cut(s) 16, 413
AcuI CTGAAG 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 121, 333
AgsI TTSAA 2 cut(s) 341, 448
AluBI AGCT 4 cut(s) 112, 352, 432, 546
AluI AGCT 4 cut(s) 112, 352, 432, 546
AlwI GGATC 2 cut(s) 207, 506
AlwNI CAGNNNCTG 2 cut(s) 202, 301
Ama87I CYCGRG 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 2 cut(s) 16, 413
AspLEI GCGC 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 533
BccI CCATC 3 cut(s) 17, 319, 509
BciVI GTATCC 1 cut(s) 199
BclI TGATCA 1 cut(s) 271
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 175
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 1 cut(s) 547
BlsI GCNGC 1 cut(s) 548
BmeT110I CYCGRG 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 331, 392, 498
BmuI ACTGGG 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 333
Bse1I ACTGG 1 cut(s) 137
Bse21I CCTNAGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 6 cut(s) 28, 43, 226, 322, 363, 407
BseLI CCNNNNNNNGG 2 cut(s) 121, 333
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 121, 333
BsmI GAATGC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 5 cut(s) 60, 199, 271, 453, 498
BspACI CCGC 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 207, 506
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 5 cut(s) 60, 199, 271, 453, 498
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 96, 134
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 170, 235
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 6 cut(s) 28, 43, 226, 322, 363, 407
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 63, 202, 274, 456, 501
BstMBI GATC 5 cut(s) 60, 199, 271, 453, 498
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 391
BstPAI GACNNNNGTC 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 120
BsuI GTATCC 1 cut(s) 199
BtsCI GGATG 6 cut(s) 28, 43, 226, 322, 363, 407
Cac8I GCNNGC 2 cut(s) 170, 235
CaiI CAGNNNCTG 2 cut(s) 202, 301
CfoI GCGC 1 cut(s) 174
CseI GACGC 1 cut(s) 74
CviAII CATG 2 cut(s) 211, 388
CviJI RGCY 5 cut(s) 97, 112, 352, 432, 546
CviKI_1 RGCY 5 cut(s) 97, 112, 352, 432, 546
DdeI CTNAG 1 cut(s) 120
DpnI GATC 5 cut(s) 62, 201, 273, 455, 500
DpnII GATC 5 cut(s) 60, 199, 271, 453, 498
Eam1104I CTCTTC 2 cut(s) 96, 134
EarI CTCTTC 2 cut(s) 96, 134
Eco130I CCWWGG 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 214, 391
FalI AAGNNNNNCTT 1 cut(s) 535
FatI CATG 2 cut(s) 210, 387
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 547
FokI GGATG 6 cut(s) 35, 50, 233, 309, 370, 414
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 547
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 175
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 214, 391
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 2 cut(s) 259, 290
HpaI GTTAAC 1 cut(s) 267
Hpy166II GTNNAC 2 cut(s) 29, 267
Hpy188I TCNGA 3 cut(s) 204, 283, 436
Hpy188III TCNNGA 2 cut(s) 192, 302
Hpy8I GTNNAC 2 cut(s) 29, 267
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 243, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 2 cut(s) 214, 391
HspAI GCGC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 271
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 5 cut(s) 60, 199, 271, 453, 498
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 117, 179
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 3 cut(s) 331, 392, 498
MaeI CTAG 1 cut(s) 392
MalI GATC 5 cut(s) 62, 201, 273, 455, 500
MbiI CCGCTC 1 cut(s) 182
MboI GATC 5 cut(s) 60, 199, 271, 453, 498
MboII GAAGA 5 cut(s) 113, 148, 151, 449, 452
MflI RGATCY 1 cut(s) 199
MluCI AATT 4 cut(s) 16, 341, 413, 443
MnlI CCTC 4 cut(s) 28, 126, 178, 298
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 3 cut(s) 266, 540, 553
MslI CAYNNNNRTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeII GATC 5 cut(s) 60, 199, 271, 453, 498
NlaIII CATG 2 cut(s) 214, 391
NlaIV GGNNCC 1 cut(s) 309
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 1 cut(s) 391
PaeR7I CTCGAG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 134
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 259, 290
PkrI GCNGC 1 cut(s) 548
PshAI GACNNNNGTC 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 309
PspXI VCTCGAGB 1 cut(s) 32
PstNI CAGNNNCTG 2 cut(s) 202, 301
PsuI RGATCY 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 266, 540, 553
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 5 cut(s) 60, 199, 271, 453, 498
SetI ASST 8 cut(s) 114, 126, 189, 229, 309, 354, 434, 548
SfaNI GCATC 3 cut(s) 331, 392, 498
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 16, 341, 413, 443
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 4 cut(s) 33, 63, 417, 456
TasI AATT 4 cut(s) 16, 341, 413, 443
TfiI GAWTC 2 cut(s) 259, 290
Tru1I TTAA 3 cut(s) 266, 540, 553
Tru9I TTAA 3 cut(s) 266, 540, 553
TseI GCWGC 1 cut(s) 546
TspDTI ATGAA 4 cut(s) 105, 237, 425, 435
XapI RAATTY 2 cut(s) 16, 413
XceI RCATGY 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.