Rroxscaffold_7G00196770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000274
Physical Location & Seq
Reverse (-)
39963216 .. 39966670
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196770.1

Sequence Viewer

Length: 300 bp
ATGTTACAGTCGTTTACAGAGGAGTATTTTGTAAAGGAATCAGGGGTTAACATGGTAGAACTTTGGATGACAAGCAGTCAAAGAACAGCAGATGACATGCCGGAACAGGGATGCAGAATGAAATTTGATGAAAAGAACAGTTCAGAAGAGGAACTGAAAATGATGGAAGTTCAATTGACTGAAACAGAGAGAGAAAGCATAAACTGGATCAAGGATAACTATAAACGAAAAATGGCAAGTGACAGAACTCAAAGACAACCCTCAAGCAAGGAGAAGATTCGTAAGTACACAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.86

Weight (kDa)

5.3

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 173
AhdI GACNNNNNGTC 1 cut(s) 75
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 122
BccI CCATC 1 cut(s) 157
BmeRI GACNNNNNGTC 1 cut(s) 75
BmsI GCATC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 72, 116
BseLI CCNNNNNNNGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 107
Bsp143I GATC 1 cut(s) 207
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 209
BssMI GATC 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 9, 140
Bst6I CTCTTC 1 cut(s) 141
BstF5I GGATG 2 cut(s) 72, 116
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 100
BtsCI GGATG 2 cut(s) 72, 116
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 52, 97
CviJI RGCY 1 cut(s) 293
CviKI_1 RGCY 1 cut(s) 293
CviQI GTAC 1 cut(s) 286
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
DriI GACNNNNNGTC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 141
Eam1105I GACNNNNNGTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 141
FaeI CATG 2 cut(s) 55, 100
FaiI YATR 4 cut(s) 53, 98, 200, 222
FatI CATG 2 cut(s) 51, 96
FokI GGATG 2 cut(s) 79, 123
HapII CCGG 1 cut(s) 101
Hin1II CATG 2 cut(s) 55, 100
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 38, 277
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 3 cut(s) 15, 49, 288
Hpy188I TCNGA 1 cut(s) 145
Hpy8I GTNNAC 3 cut(s) 15, 49, 288
HpyCH4III ACNGT 2 cut(s) 9, 140
HpyCH4V TGCA 1 cut(s) 114
Hsp92II CATG 2 cut(s) 55, 100
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 4 cut(s) 27, 92, 114, 190
LweI GCATC 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 3, 239
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 2 cut(s) 158, 286
MfeI CAATTG 1 cut(s) 173
MluCI AATT 2 cut(s) 122, 173
MnlI CCTC 3 cut(s) 13, 142, 271
MseI TTAA 2 cut(s) 48, 298
MspI CCGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 173
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 55, 100
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 100
PfeI GAWTC 2 cut(s) 38, 277
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 48, 298
Sau3AI GATC 1 cut(s) 207
SetI ASST 1 cut(s) 295
SfaNI GCATC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 122, 173
TaaI ACNGT 2 cut(s) 9, 140
TasI AATT 2 cut(s) 122, 173
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 38, 277
Tru1I TTAA 2 cut(s) 48, 298
Tru9I TTAA 2 cut(s) 48, 298
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 134, 144
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.