FvH4_6g06060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Reverse (-)
3452603 .. 3456815
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06060.t1

Sequence Viewer

Length: 531 bp
ATGGAGAGAAATAATAGACTTTGCTTTGGAGAAGATGAAGAGATAGACATCACAACCGTAGATCAAGTTCTGCTTAAATTACGAGGCATTGATGGATTCAAAATCCTTAATTTCTCTATTTCTGGAATGGGAGGACTAGGAAAGATAACCTCAGCTGAGAAAATGAAGGAAACAAAAGAGAAGGAGGAGACGGCAAAGAAAGATGCGAGTGCTAAAGATAAGAGTGAGGCAACAGAGAACATAGCTCAACTTCCAATACAAAATTCAGAAGAATTAGATCTTGAAGCATTAGAACAGGTTGAAAGAGAGCTAAAAAAGAATTCAAAGAACATGGCCGATGAGGATAAAAAGAAAGAGGGGGCAACAGAGAAAGATGCAAGCACTCATAAAAAAGAGAAGAGTGAGGCTCAGATTCCAACTCAAAATTCAGAAGACTTATATCTTGAAGAAATAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACAATGAAACGAAGGGTAATTCTCAAGAATTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.92

Weight (kDa)

4.87

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 3 cut(s) 262, 319, 424
AgsI TTSAA 6 cut(s) 100, 284, 302, 324, 446, 526
AjuI GAANNNNNNNTTGG 4 cut(s) 247, 279, 409, 441
AluBI AGCT 4 cut(s) 155, 245, 310, 472
AluI AGCT 4 cut(s) 155, 245, 310, 472
Alw26I GTCTC 1 cut(s) 182
AoxI GGCC 1 cut(s) 333
ApoI RAATTY 3 cut(s) 262, 319, 424
BbsI GAAGAC 1 cut(s) 438
BbvCI CCTCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 2 cut(s) 137, 529
BglII AGATCT 1 cut(s) 277
BmsI GCATC 2 cut(s) 193, 364
BpiI GAAGAC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 391, 423
Bpu10I CCTNAGC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 47
BseJI GATNNNNATC 1 cut(s) 47
BseMII CTCAG 3 cut(s) 147, 165, 422
BseRI GAGGAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 182
BsmBI CGTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 335
Bsp143I GATC 2 cut(s) 61, 277
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 3 cut(s) 148, 164, 421
BspQI GCTCTTC 1 cut(s) 462
BssMI GATC 2 cut(s) 61, 277
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 3 cut(s) 33, 392, 462
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 3 cut(s) 151, 156, 408
BstKTI GATC 2 cut(s) 64, 280
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 61, 277
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 379
CviAII CATG 1 cut(s) 331
CviJI RGCY 6 cut(s) 155, 245, 310, 335, 407, 472
CviKI_1 RGCY 6 cut(s) 155, 245, 310, 335, 407, 472
DdeI CTNAG 3 cut(s) 151, 156, 408
DpnI GATC 2 cut(s) 63, 279
DpnII GATC 2 cut(s) 61, 277
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 33, 392, 462
EarI CTCTTC 3 cut(s) 33, 392, 462
EcoRI GAATTC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 1 cut(s) 334
FaiI YATR 4 cut(s) 242, 332, 387, 439
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 1 cut(s) 330
FspBI CTAG 2 cut(s) 137, 529
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 1 cut(s) 334
HinfI GANTC 2 cut(s) 96, 412
Hpy188I TCNGA 3 cut(s) 268, 411, 430
Hpy188III TCNNGA 4 cut(s) 123, 281, 443, 518
HpyAV CCTTC 3 cut(s) 160, 175, 499
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 151, 156, 408
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 61, 277
LguI GCTCTTC 1 cut(s) 462
LpnPI CCDG 2 cut(s) 108, 281
LweI GCATC 2 cut(s) 193, 364
MaeI CTAG 2 cut(s) 137, 529
MalI GATC 2 cut(s) 63, 279
MboI GATC 2 cut(s) 61, 277
MboII GAAGA 9 cut(s) 44, 50, 281, 409, 443, 458, 479, 493, 496
MflI RGATCY 1 cut(s) 277
MluCI AATT 8 cut(s) 77, 109, 262, 272, 319, 424, 511, 521
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 9 cut(s) 77, 125, 160, 178, 220, 334, 349, 397, 457
MseI TTAA 3 cut(s) 75, 108, 474
MspA1I CMGCKG 1 cut(s) 155
NdeII GATC 2 cut(s) 61, 277
NlaIII CATG 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 96, 412
PsrI GAACNNNNNNTAC 2 cut(s) 51, 83
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 3 cut(s) 75, 108, 474
Sau3AI GATC 2 cut(s) 61, 277
SetI ASST 6 cut(s) 152, 157, 247, 300, 312, 474
SfaNI GCATC 2 cut(s) 193, 364
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
Sse9I AATT 8 cut(s) 77, 109, 262, 272, 319, 424, 511, 521
SspMI CTAG 2 cut(s) 137, 529
TaaI ACNGT 1 cut(s) 58
TasI AATT 8 cut(s) 77, 109, 262, 272, 319, 424, 511, 521
TfiI GAWTC 2 cut(s) 96, 412
Tru1I TTAA 3 cut(s) 75, 108, 474
Tru9I TTAA 3 cut(s) 75, 108, 474
TspDTI ATGAA 3 cut(s) 51, 179, 513
XapI RAATTY 3 cut(s) 262, 319, 424
XspI CTAG 2 cut(s) 137, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.