Rmu_sc0000270.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000270.1
OG0000274
Physical Location & Seq
Forward (+)
4930 .. 5426
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000270.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
atgttggaaatgcaggttgaaatggtagagctttggatgactgcagtaaaagaacaagcagatgacatggtagaacaaggttgcaggatgaaatttgatgaaaagaacagttcaaaagaacaactgaaaatgatagaagttccattgattgaaacagagagagaaagcataaagtggatcaaggataactataaacgaaaaatgacagtgacagaactcaaagacaaccctcagcaaggagaagattcattggattgcggactttttgtaatgtacacaatggagaaaattttgaaaaaagggacagttccaaagaagctcacaaaggatgatattttgaagtttagagctcatgtggtgaagtcatttgcagaaagtaggcacagctggaactcacaacataatgaagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

16.19

Weight (kDa)

5.97

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 2 cut(s) 92, 288
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 5 cut(s) 20, 114, 152, 295, 340
AluBI AGCT 4 cut(s) 31, 319, 350, 387
AluI AGCT 4 cut(s) 31, 319, 350, 387
Alw21I GWGCWC 1 cut(s) 352
AlwI GGATC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 92, 288
AsuHPI GGTGA 1 cut(s) 370
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseGI GGATG 3 cut(s) 42, 93, 334
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 352
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 273
BssMI GATC 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 110, 208, 307
BstAUI TGTACA 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 42, 93, 334
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 42
BtsCI GGATG 3 cut(s) 42, 93, 334
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 67, 353
CviJI RGCY 4 cut(s) 31, 319, 350, 387
CviKI_1 RGCY 4 cut(s) 31, 319, 350, 387
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 2 cut(s) 70, 356
FaiI YATR 5 cut(s) 68, 170, 192, 354, 402
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 66, 352
FokI GGATG 3 cut(s) 49, 100, 341
FriOI GRGCYC 1 cut(s) 352
Hin1II CATG 2 cut(s) 70, 356
HinfI GANTC 1 cut(s) 245
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 276
HpyCH4III ACNGT 3 cut(s) 110, 208, 307
HpyCH4V TGCA 4 cut(s) 13, 44, 84, 371
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 70, 356
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 70, 373
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 2 cut(s) 92, 288
MnlI CCTC 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 387
NdeII GATC 1 cut(s) 177
NlaIII CATG 2 cut(s) 70, 356
NmuCI GTSAC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 352
PstI CTGCAG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 1 cut(s) 352
Sau3AI GATC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 352
SetI ASST 6 cut(s) 18, 33, 82, 321, 352, 389
SfcI CTRYAG 1 cut(s) 42
SgeI CNNG 9 cut(s) 26, 68, 79, 89, 97, 193, 248, 365, 400
Sse9I AATT 2 cut(s) 92, 288
SsiI CCGC 1 cut(s) 258
SstI GAGCTC 1 cut(s) 352
TaaI ACNGT 3 cut(s) 110, 208, 307
TasI AATT 2 cut(s) 92, 288
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 104, 114, 237
TspRI CASTG 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 2 cut(s) 92, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.