Rroxscaffold_2G00102440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000274
Physical Location & Seq
Reverse (-)
24596356 .. 24597353
998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102440.1

Sequence Viewer

Length: 258 bp
ATGCCTCATGCAGATCCATTGGCTCTTCGATTCCAATCCCTCCAATCTCCCAAATTTATGTCCATTGTTCGAAAGGAAGGGCTTGAGATATCACAACTGGCACTTGATTTTTCCAAGACACAGGTGAACTACTTGGAGAAACTTTCAAAAAAGGAGGGGATTCAGAAGAAACTCAGCAAGAAGGAATATAAAGCTCATATAATCAAGATGTTTGGATGTTTGCGGAACATAGGCACAATTGGATCTATGCAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

9.89

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 8, 250
AcsI RAATTY 1 cut(s) 53
AgsI TTSAA 1 cut(s) 147
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwI GGATC 2 cut(s) 8, 250
ApoI RAATTY 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 34
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 34
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 13, 242
BspACI CCGC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 186
BspPI GGATC 2 cut(s) 8, 250
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 70
BsrI ACTGG 1 cut(s) 102
BssMI GATC 2 cut(s) 13, 242
Bst6I CTCTTC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 2 cut(s) 16, 245
BstMBI GATC 2 cut(s) 13, 242
BstX2I RGATCY 2 cut(s) 13, 242
BstYI RGATCY 2 cut(s) 13, 242
BtsCI GGATG 1 cut(s) 221
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 23, 82, 194
CviKI_1 RGCY 3 cut(s) 23, 82, 194
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 15, 244
DpnII GATC 2 cut(s) 13, 242
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 90
EcoRV GATATC 1 cut(s) 90
FaeI CATG 1 cut(s) 11
FaiI YATR 7 cut(s) 9, 59, 189, 198, 200, 230, 248
FatI CATG 1 cut(s) 7
FokI GGATG 1 cut(s) 228
Hin1II CATG 1 cut(s) 11
HinfI GANTC 2 cut(s) 30, 160
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 71, 175
HpyCH4V TGCA 2 cut(s) 11, 250
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 2 cut(s) 13, 242
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 83, 107
MalI GATC 2 cut(s) 15, 244
MboI GATC 2 cut(s) 13, 242
MboII GAAGA 2 cut(s) 17, 178
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 13, 242
MluCI AATT 2 cut(s) 53, 237
MnlI CCTC 3 cut(s) 15, 50, 148
MunI CAATTG 1 cut(s) 237
NdeII GATC 2 cut(s) 13, 242
NlaIII CATG 1 cut(s) 11
NspV TTCGAA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 30, 160
PsuI RGATCY 2 cut(s) 13, 242
SapI GCTCTTC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 13, 242
SetI ASST 2 cut(s) 126, 196
SfuI TTCGAA 1 cut(s) 70
SgeI CNNG 9 cut(s) 20, 95, 110, 116, 127, 134, 145, 190, 217
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 53, 237
SsiI CCGC 1 cut(s) 223
TaqI TCGA 2 cut(s) 28, 70
TasI AATT 2 cut(s) 53, 237
TfiI GAWTC 2 cut(s) 30, 160
XapI RAATTY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.