Rmu_sc0000532.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000532.1
OG0000274
Physical Location & Seq
Forward (+)
72074 .. 76224
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000532.1_g000016.1.cds

Sequence Viewer

Length: 1371 bp
atggatgaaccgatagcaagcaattgcatcgaatgttatggaattctcttgactgatcaattgttggagaaagaatcacaagacttggatgtcccaacttttgtgaatcccttatgttgggttgaaatggtagagctttggatgactgcagtaaaagaacaagcagatgacatggtagaacaaggttgcaggatgaaatttgatgaaaagaacagttcaaaagaacaactgaaaatgaaagaagttccattgactgaaacagagagagaaagcataaagtggatcaaggataactacaaacgaaaaatggcagtgacagaactcaaagacaaccctcagcaaggagaagattcactccctgaagatgaagaagaatcaagtgaagatgaggaagaaacaactaaagttgaagaagaatctaatgaagaacaagtccggggtaagaagacaaagaaggataaaaagaagaaaagaagaaatagggaagaaacagaagatgaagaagaagaatctgatggagaagaagttcgtgccaagaagaagaagaaaatggataaaaggaagacaaaaaaagagagtacaaagaagaaggaagaaactgacgaggaagaagatacaaaggatgaagtagaggaaaaagtcccagggaaaaggaaaagatatgtaaaagagggttatgtgcataccaaagaccaaagaaggggcatacaatctgagttcgtgactaaatactttgacaaaaagcagaggatcaacaaggcggctgtagaggaagctttgaagaaggcattggcagaaactccagaaacagaggaagaaaaaacgaaacgggacagaaatgttgccgtattaatactcttgaaccttttcatcaaactcctgttcccaaactcgggaggaacaatatcttgggactatataagagtctgtgaagaggtggaaatactggttttgccacaagaagggagtagtgccgccaatctctggaagagaaaccgaaaaacacggaataagaaagtggcaattaaagaccttgatagagaaaaaaggggatttcaacaccatggggaagttgaagtgcatgtaactttacatgtctatgattgtgtggttgttttatttctgtcactgcttatgtcactgacaacttttgtaattttgtttcagaaaatctttgataaagttaaagaagatgcagaggaagaagattctgagtctaatacagacacagaaagtaaagaaaaaaagaatgatgggcaagaagaaaatgttgaaactagaaccagtggaaatatggtgaaggagactgcatcgaatgataaacagaagaaagaattagagacaaatcttcagaaaaaggaagagagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

53.37

Weight (kDa)

5.11

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 984
AciI CCGC 2 cut(s) 761, 975
AclWI GGATC 2 cut(s) 290, 758
AcsI RAATTY 2 cut(s) 42, 197
AcuI CTGAAG 2 cut(s) 381, 1334
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 7 cut(s) 117, 341, 700, 892, 893, 962, 984
AflIII ACRYGT 1 cut(s) 1093
AgsI TTSAA 8 cut(s) 125, 219, 410, 781, 862, 1058, 1076, 1274
AjnI CCWGG 1 cut(s) 643
AjuI GAANNNNNNNTTGG 4 cut(s) 773, 805, 892, 924
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 3 cut(s) 136, 776, 1368
AluI AGCT 3 cut(s) 136, 776, 1368
Alw26I GTCTC 2 cut(s) 1298, 1334
AlwI GGATC 2 cut(s) 290, 758
Ama87I CYCGRG 1 cut(s) 892
ApoI RAATTY 2 cut(s) 42, 197
AseI ATTAAT 1 cut(s) 851
Asp700I GAANNNNTTC 2 cut(s) 525, 866
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 1309
AvaI CYCGRG 1 cut(s) 892
BbsI GAAGAC 2 cut(s) 452, 569
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 509, 1247
BceAI ACGGC 1 cut(s) 830
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 1298, 1334
BfaI CTAG 1 cut(s) 1278
BfmI CTRYAG 2 cut(s) 147, 765
BisI GCNGC 2 cut(s) 762, 975
BlsI GCNGC 2 cut(s) 763, 976
Bme1390I CCNGG 2 cut(s) 437, 645
BmeT110I CYCGRG 1 cut(s) 892
BmrFI CCNGG 2 cut(s) 437, 645
BmsI GCATC 3 cut(s) 36, 1183, 1319
BpiI GAAGAC 2 cut(s) 452, 569
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 436, 643, 644, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 341, 700, 892, 893, 962, 984
Bse1I ACTGG 2 cut(s) 951, 1284
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 436, 643, 644, 1063
BseGI GGATG 5 cut(s) 10, 94, 147, 198, 628
BseLI CCNNNNNNNGG 7 cut(s) 117, 341, 700, 892, 893, 962, 984
BseMII CTCAG 3 cut(s) 350, 705, 1203
BseNI ACTGG 2 cut(s) 951, 1284
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 4 cut(s) 77, 626, 845, 926
BslI CCNNNNNNNGG 7 cut(s) 117, 341, 700, 892, 893, 962, 984
BsmAI GTCTC 2 cut(s) 1298, 1334
BsmFI GGGAC 4 cut(s) 77, 626, 845, 926
BsoBI CYCGRG 1 cut(s) 892
Bsp143I GATC 3 cut(s) 55, 282, 750
Bsp19I CCATGG 1 cut(s) 1063
BspACI CCGC 2 cut(s) 761, 975
BspCNI CTCAG 3 cut(s) 349, 706, 1204
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 290, 758
BsrI ACTGG 2 cut(s) 951, 1284
BssECI CCNNGG 4 cut(s) 436, 643, 644, 1063
BssMI GATC 3 cut(s) 55, 282, 750
BssT1I CCWWGG 1 cut(s) 1063
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 3 cut(s) 927, 983, 1356
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 336, 714, 1212
BstDSI CCRYGG 1 cut(s) 1063
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 10, 94, 147, 198, 628
BstKTI GATC 3 cut(s) 58, 285, 753
BstMAI GTCTC 2 cut(s) 1298, 1334
BstMBI GATC 3 cut(s) 55, 282, 750
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 2 cut(s) 1085, 1097
BstSCI CCNGG 2 cut(s) 435, 643
BstSFI CTRYAG 2 cut(s) 147, 765
BstV2I GAAGAC 2 cut(s) 452, 569
BtgI CCRYGG 1 cut(s) 1063
BtsCI GGATG 5 cut(s) 10, 94, 147, 198, 628
BtsI GCAGTG 2 cut(s) 318, 1127
BtsIMutI CAGTG 4 cut(s) 318, 1127, 1139, 1291
Cac8I GCNNGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 579
CviAII CATG 4 cut(s) 172, 1064, 1082, 1094
CviJI RGCY 4 cut(s) 136, 764, 776, 1368
CviKI_1 RGCY 4 cut(s) 136, 764, 776, 1368
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 3 cut(s) 336, 714, 1212
DpnI GATC 3 cut(s) 57, 284, 752
DpnII GATC 3 cut(s) 55, 282, 750
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 3 cut(s) 927, 983, 1356
EarI CTCTTC 3 cut(s) 927, 983, 1356
Eco130I CCWWGG 1 cut(s) 1063
Eco57I CTGAAG 2 cut(s) 381, 1334
Eco88I CYCGRG 1 cut(s) 892
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 1063
ErhI CCWWGG 1 cut(s) 1063
FaeI CATG 4 cut(s) 175, 1067, 1085, 1097
FaqI GGGAC 4 cut(s) 77, 626, 845, 926
FatI CATG 4 cut(s) 171, 1063, 1081, 1093
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 762, 975
FokI GGATG 5 cut(s) 17, 101, 154, 205, 635
Fsp4HI GCNGC 2 cut(s) 762, 975
FspBI CTAG 1 cut(s) 1278
GluI GCNGC 2 cut(s) 762, 975
GsuI CTGGAG 1 cut(s) 786
HapII CCGG 1 cut(s) 436
Hin1II CATG 4 cut(s) 175, 1067, 1085, 1097
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 9 cut(s) 74, 106, 350, 374, 416, 509, 924, 1208, 1214
HpaII CCGG 1 cut(s) 436
HphI GGTGA 1 cut(s) 1309
Hpy188I TCNGA 5 cut(s) 514, 715, 1167, 1213, 1353
Hpy188III TCNNGA 6 cut(s) 49, 721, 803, 859, 894, 985
HpyAV CCTTC 6 cut(s) 448, 583, 693, 778, 956, 1294
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 7 cut(s) 27, 149, 189, 682, 1081, 1196, 1310
HpyF3I CTNAG 3 cut(s) 336, 714, 1212
Hsp92II CATG 4 cut(s) 175, 1067, 1085, 1097
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 282, 750
LweI GCATC 3 cut(s) 36, 1183, 1319
MaeI CTAG 1 cut(s) 1278
MaeIII GTNAC 5 cut(s) 313, 721, 1084, 1125, 1137
MalI GATC 3 cut(s) 57, 284, 752
MboI GATC 3 cut(s) 55, 282, 750
MfeI CAATTG 2 cut(s) 22, 59
MluCI AATT 7 cut(s) 22, 42, 59, 197, 1023, 1155, 1334
MlyI GAGTC 2 cut(s) 933, 1223
MmeI TCCRAC 1 cut(s) 45
MroXI GAANNNNTTC 2 cut(s) 525, 866
MseI TTAA 3 cut(s) 851, 1026, 1185
MslI CAYNNNNRTG 1 cut(s) 1098
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 2 cut(s) 437, 645
MunI CAATTG 2 cut(s) 22, 59
MvaI CCWGG 1 cut(s) 645
NciI CCSGG 1 cut(s) 437
NcoI CCATGG 1 cut(s) 1063
NdeII GATC 3 cut(s) 55, 282, 750
NlaIII CATG 4 cut(s) 175, 1067, 1085, 1097
NmuCI GTSAC 4 cut(s) 313, 721, 1125, 1137
NspI RCATGY 2 cut(s) 1085, 1097
PasI CCCWGGG 1 cut(s) 644
PciI ACATGT 1 cut(s) 1093
PdmI GAANNNNTTC 2 cut(s) 525, 866
PfeI GAWTC 7 cut(s) 74, 106, 350, 374, 416, 509, 1208
PflMI CCANNNNNTGG 1 cut(s) 984
PkrI GCNGC 2 cut(s) 763, 976
PleI GAGTC 2 cut(s) 932, 1222
PpsI GAGTC 2 cut(s) 932, 1222
PscI ACATGT 1 cut(s) 1093
PshBI ATTAAT 1 cut(s) 851
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PstI CTGCAG 1 cut(s) 151
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 1098
SaqAI TTAA 3 cut(s) 851, 1026, 1185
SatI GCNGC 2 cut(s) 762, 975
Sau3AI GATC 3 cut(s) 55, 282, 750
SchI GAGTC 2 cut(s) 933, 1223
ScrFI CCNGG 2 cut(s) 437, 645
SetI ASST 7 cut(s) 138, 187, 778, 867, 939, 1035, 1370
SfaNI GCATC 3 cut(s) 36, 1183, 1319
SfcI CTRYAG 2 cut(s) 147, 765
SmiMI CAYNNNNRTG 1 cut(s) 1098
Sse9I AATT 7 cut(s) 22, 42, 59, 197, 1023, 1155, 1334
SsiI CCGC 2 cut(s) 761, 975
SspMI CTAG 1 cut(s) 1278
StyD4I CCNGG 2 cut(s) 435, 643
StyI CCWWGG 1 cut(s) 1063
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 30, 1313
TasI AATT 7 cut(s) 22, 42, 59, 197, 1023, 1155, 1334
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 764, 977
TfiI GAWTC 7 cut(s) 74, 106, 350, 374, 416, 509, 1208
Tru1I TTAA 3 cut(s) 851, 1026, 1185
Tru9I TTAA 3 cut(s) 851, 1026, 1185
TscAI CASTG 4 cut(s) 318, 1134, 1146, 1291
TseFI GTSAC 4 cut(s) 313, 721, 1125, 1137
Tsp45I GTSAC 4 cut(s) 313, 721, 1125, 1137
TspDTI ATGAA 9 cut(s) 21, 209, 219, 251, 381, 438, 513, 639, 859
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 4 cut(s) 318, 1134, 1146, 1291
Van91I CCANNNNNTGG 1 cut(s) 984
VspI ATTAAT 1 cut(s) 851
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 2 cut(s) 42, 197
XceI RCATGY 2 cut(s) 1085, 1097
XcmI CCANNNNNNNNNTGG 1 cut(s) 1291
XmnI GAANNNNTTC 2 cut(s) 525, 866
XspI CTAG 1 cut(s) 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.