FvH4_4g04910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000274
Physical Location & Seq
Forward (+)
4266798 .. 4268547
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04910.t1

Sequence Viewer

Length: 915 bp
ATGGAAGAAGAGTATGAATCAAGGCAGACAGAACTACATGAGAAGTTGGAAAATGCAGTACAGGATTTGATGGTTGAGAGGATAATTATCGATGAAACAAGGATGGAGAATGAAAAACTCAATGAAGAACTGAAGAAGCTGCAAGTTTTGGTGGCGGCATTAGCACCAAACTCTCAAGATGAGAGAGTTCTAGAAAGCAATGAAGATGATCAGGATCCTAAAGGAGGAGCAAACAAGGGAGGAAAAAACAATAAAGATCTGAAGGACAAGGAAGCTGATAAGGTAGCTGAAGAAGATGATGATAAGGAAGCGGCTAAGGATCCTGAAGGAACTGGCAAGGAAGATGAAGTAGCTGAGAAAATAGAGCAAACAAAAGAGAAGAAGGAGGAGACGGCAGAGAAAGATGCCAGTGCTGAAGATAAGAAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACAAAGGCTTACTGTGAGCAGCCACCAGAGTCACCACCAAGGAGGACGGTTGCGGAAGAAGCTCGTTGGTCGCCGAAAACACCGATAATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTATCTCCACAGGTAGCAGTTCATGTCATTAATCTAGATGAAGAGGAGAGTGATATCAAGATCGAGCTGACAGAGGAAGACTCTGGAAGGACAACATCATCCTTAGGGATGTATTCCTATGTGGCTCAGATCAAGAACAAGCAAAGAAGGCCAGCAAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAAAGAAATAGCAGAAGAAAAAAAGAAAAATCTTGAGCAGAAGAGGAAGAACAAGATAGGAGAAGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

35.11

Weight (kDa)

4.78

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 619
AciI CCGC 3 cut(s) 155, 311, 548
AclWI GGATC 4 cut(s) 209, 222, 314, 327
AcuI CTGAAG 5 cut(s) 152, 281, 309, 345, 435
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 440
AluBI AGCT 7 cut(s) 139, 275, 287, 353, 466, 557, 697
AluI AGCT 7 cut(s) 139, 275, 287, 353, 466, 557, 697
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 4 cut(s) 209, 222, 314, 327
AoxI GGCC 2 cut(s) 779, 840
ApeKI GCWGC 2 cut(s) 139, 514
AseI ATTAAT 1 cut(s) 660
AsuHPI GGTGA 1 cut(s) 519
AxyI CCTNAGG 1 cut(s) 733
BamHI GGATCC 2 cut(s) 214, 319
BbsI GAAGAC 1 cut(s) 714
BbvI GCAGC 2 cut(s) 126, 526
BccI CCATC 3 cut(s) 64, 97, 592
BceAI ACGGC 1 cut(s) 408
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 2 cut(s) 191, 665
BfuAI ACCTGC 1 cut(s) 619
BglII AGATCT 1 cut(s) 256
BisI GCNGC 4 cut(s) 140, 156, 312, 515
BlsI GCNGC 4 cut(s) 141, 157, 313, 516
BmiI GGNNCC 2 cut(s) 216, 321
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 695, 727
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 159, 896
Bsa29I ATCGAT 1 cut(s) 90
BsaBI GATNNNNATC 2 cut(s) 86, 213
BsaJI CCNNGG 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 337, 408, 809
Bse21I CCTNAGG 1 cut(s) 733
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 2 cut(s) 86, 213
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 3 cut(s) 108, 728, 744
BseJI GATNNNNATC 2 cut(s) 86, 213
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 345, 770
BseNI ACTGG 3 cut(s) 337, 408, 809
BseRI GAGGAG 3 cut(s) 240, 401, 689
BseXI GCAGC 2 cut(s) 126, 526
BshFI GGCC 2 cut(s) 781, 842
BshVI ATCGAT 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsnI GGCC 2 cut(s) 781, 842
Bsp143I GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
BspACI CCGC 3 cut(s) 155, 311, 548
BspANI GGCC 2 cut(s) 781, 842
BspCNI CTCAG 2 cut(s) 346, 769
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 216, 321
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 4 cut(s) 209, 222, 314, 327
BspQI GCTCTTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 3 cut(s) 337, 408, 809
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
BssT1I CCWWGG 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 509, 544
Bst6I CTCTTC 4 cut(s) 3, 456, 666, 878
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 4 cut(s) 315, 354, 733, 756
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 108, 728, 744
BstKTI GATC 7 cut(s) 211, 217, 259, 322, 630, 693, 762
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
BstMWI GCNNNNNNNGC 3 cut(s) 161, 554, 778
BstV1I GCAGC 2 cut(s) 126, 526
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 3 cut(s) 214, 256, 319
BstYI RGATCY 3 cut(s) 214, 256, 319
Bsu15I ATCGAT 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 733
BsuRI GGCC 2 cut(s) 781, 842
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 3 cut(s) 108, 728, 744
BtsIMutI CAGTG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 783
ClaI ATCGAT 1 cut(s) 90
Csp6I GTAC 1 cut(s) 59
CviAII CATG 2 cut(s) 38, 653
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 4 cut(s) 315, 354, 733, 756
DpnI GATC 7 cut(s) 210, 216, 258, 321, 629, 692, 761
DpnII GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
Eam1104I CTCTTC 4 cut(s) 3, 456, 666, 878
EarI CTCTTC 4 cut(s) 3, 456, 666, 878
Eco130I CCWWGG 1 cut(s) 533
Eco32I GATATC 1 cut(s) 685
Eco57I CTGAAG 5 cut(s) 152, 281, 309, 345, 435
Eco81I CCTNAGG 1 cut(s) 733
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 533
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 2 cut(s) 41, 656
FaiI YATR 8 cut(s) 15, 39, 433, 435, 654, 750, 800, 802
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 2 cut(s) 37, 652
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 140, 156, 312, 515
FokI GGATG 3 cut(s) 115, 715, 751
Fsp4HI GCNGC 4 cut(s) 140, 156, 312, 515
FspBI CTAG 2 cut(s) 191, 665
GluI GCNGC 4 cut(s) 140, 156, 312, 515
HaeIII GGCC 2 cut(s) 781, 842
Hin1II CATG 2 cut(s) 41, 656
HinfI GANTC 3 cut(s) 17, 524, 710
HphI GGTGA 1 cut(s) 519
Hpy188I TCNGA 2 cut(s) 261, 759
Hpy188III TCNNGA 9 cut(s) 176, 191, 212, 323, 665, 688, 714, 763, 875
HpyAV CCTTC 7 cut(s) 256, 320, 376, 711, 771, 832, 899
HpyCH4III ACNGT 2 cut(s) 509, 544
HpyCH4V TGCA 3 cut(s) 56, 142, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 554, 778
HpyF3I CTNAG 4 cut(s) 315, 354, 733, 756
Hsp92II CATG 2 cut(s) 41, 656
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 2 cut(s) 126, 526
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 191, 665
MaeIII GTNAC 1 cut(s) 525
MalI GATC 7 cut(s) 210, 216, 258, 321, 629, 692, 761
MboI GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
MflI RGATCY 3 cut(s) 214, 256, 319
MluCI AATT 3 cut(s) 84, 443, 582
MlyI GAGTC 2 cut(s) 533, 704
MmeI TCCRAC 1 cut(s) 27
MseI TTAA 4 cut(s) 468, 660, 819, 913
MwoI GCNNNNNNNGC 3 cut(s) 161, 554, 778
NdeII GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
NlaIII CATG 2 cut(s) 41, 656
NlaIV GGNNCC 2 cut(s) 216, 321
NmuCI GTSAC 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 4 cut(s) 141, 157, 313, 516
PleI GAGTC 2 cut(s) 532, 704
PpsI GAGTC 2 cut(s) 532, 704
PshBI ATTAAT 1 cut(s) 660
PspN4I GGNNCC 2 cut(s) 216, 321
PsuI RGATCY 3 cut(s) 214, 256, 319
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 4 cut(s) 468, 660, 819, 913
SatI GCNGC 4 cut(s) 140, 156, 312, 515
Sau3AI GATC 7 cut(s) 208, 214, 256, 319, 627, 690, 759
SchI GAGTC 2 cut(s) 533, 704
SfaNI GCATC 1 cut(s) 394
SmlI CTYRAG 2 cut(s) 174, 875
SmoI CTYRAG 2 cut(s) 174, 875
Sse9I AATT 3 cut(s) 84, 443, 582
SsiI CCGC 3 cut(s) 155, 311, 548
SspMI CTAG 2 cut(s) 191, 665
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 2 cut(s) 509, 544
TaqI TCGA 2 cut(s) 90, 693
TasI AATT 3 cut(s) 84, 443, 582
TatI WGTACW 1 cut(s) 58
TauI GCSGC 2 cut(s) 158, 314
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 4 cut(s) 468, 660, 819, 913
Tru9I TTAA 4 cut(s) 468, 660, 819, 913
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 2 cut(s) 139, 514
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 9 cut(s) 30, 108, 126, 138, 216, 360, 507, 641, 684
TspRI CASTG 1 cut(s) 415
VspI ATTAAT 1 cut(s) 660
XagI CCTNNNNNAGG 1 cut(s) 222
XbaI TCTAGA 2 cut(s) 190, 664
XspI CTAG 2 cut(s) 191, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.