Rorug03G0270700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000274
Physical Location & Seq
Forward (+)
26690646 .. 26692150
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0270700.1

Sequence Viewer

Length: 366 bp
ATGTTCTCTTCTGCCTGCAGTGATTACGGGGTGAAAGGTGACTGTTTGTGGCTGCAGGTGCTAAATCAGAAAAGTGCTACTTCACCAAATCTCCCTGCTGTTTCTTCACTACCGCTTCTAAGGTTGCTTTGGAGTGTTAACCTTTCTTGGTGTTTTGATTGGAGCAGTATGGGTATTACTGAAGCATTGCAATTGCAGGTCCAAAAGCGGCTTCATGAACAACTTGAGATAGAGTTTTGCTTTACAGTTACAGAGTTTGGTTATGATGTGGTACTTACATGTCAAAACAATCTCCATTATTTTGGTCTTTGTAGTAGGCAGATGGATGAAAAGGTTTATAAAGTTGAGGTGACTGCTCATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

121

Amino Acids

13.86

Weight (kDa)

5.06

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 58 - 77 5.3e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AarI CACCTGC 1 cut(s) 46
Acc36I ACCTGC 2 cut(s) 46, 187
AciI CCGC 2 cut(s) 113, 208
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
ApeKI GCWGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 43, 50, 75, 361
AvaII GGWCC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 316
BfmI CTRYAG 2 cut(s) 16, 53
BfuAI ACCTGC 2 cut(s) 46, 187
BisI GCNGC 2 cut(s) 53, 209
BlsI GCNGC 2 cut(s) 54, 210
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bse3DI GCAATG 1 cut(s) 185
BseGI GGATG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 39
BspACI CCGC 2 cut(s) 113, 208
BspHI TCATGA 2 cut(s) 214, 358
BspMAI CTGCAG 2 cut(s) 20, 57
BspMI ACCTGC 2 cut(s) 46, 187
BsrDI GCAATG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 44, 247
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 282
BstSFI CTRYAG 2 cut(s) 16, 53
BstV1I GCAGC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 302
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 2 cut(s) 46, 187
Cac8I GCNNGC 1 cut(s) 16
CciI TCATGA 2 cut(s) 214, 358
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 272
CviAII CATG 3 cut(s) 215, 279, 359
CviJI RGCY 2 cut(s) 52, 211
CviKI_1 RGCY 2 cut(s) 52, 211
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 3 cut(s) 218, 282, 362
FaiI YATR 6 cut(s) 170, 216, 264, 280, 339, 360
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 3 cut(s) 214, 278, 358
Fnu4HI GCNGC 2 cut(s) 53, 209
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 2 cut(s) 53, 209
GluI GCNGC 2 cut(s) 53, 209
Hin1II CATG 3 cut(s) 218, 282, 362
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HpaI GTTAAC 1 cut(s) 139
HphI GGTGA 4 cut(s) 43, 50, 75, 361
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 215, 359
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 44, 247
HpyCH4V TGCA 4 cut(s) 18, 55, 190, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 3 cut(s) 218, 282, 362
KspAI GTTAAC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 28, 41, 108, 182
Lsp1109I GCAGC 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 38, 247, 349
MboII GAAGA 1 cut(s) 96
MfeI CAATTG 1 cut(s) 191
MluCI AATT 1 cut(s) 191
MnlI CCTC 1 cut(s) 340
MseI TTAA 1 cut(s) 138
MunI CAATTG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 58
NlaIII CATG 3 cut(s) 218, 282, 362
NmuCI GTSAC 2 cut(s) 38, 349
NspI RCATGY 1 cut(s) 282
PagI TCATGA 2 cut(s) 214, 358
PaqCI CACCTGC 1 cut(s) 46
PciI ACATGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 54, 210
PscI ACATGT 1 cut(s) 278
PsiI TTATAA 1 cut(s) 339
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 2 cut(s) 20, 57
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 53, 209
Sau96I GGNCC 1 cut(s) 199
SetI ASST 7 cut(s) 40, 60, 125, 144, 201, 336, 351
SfcI CTRYAG 2 cut(s) 16, 53
SgeI CNNG 9 cut(s) 27, 40, 68, 107, 159, 209, 227, 236, 291
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 191
SsiI CCGC 2 cut(s) 113, 208
TaaI ACNGT 2 cut(s) 44, 247
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 2 cut(s) 38, 349
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 38, 349
TspDTI ATGAA 3 cut(s) 203, 231, 342
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.