Rh7AG238800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000274
Physical Location & Seq
Forward (+)
23351669 .. 23359735
8067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG238800.1

Sequence Viewer

Length: 306 bp
ATGATAAGTCAGTGGCCGAAACAACCACAACTAGCTAGTTTCTTAGTCCAAGATCGAATGATTTTGTGTACATCCTCCGAAAAAAGGCTTGAAGACAGAGGGTTTGTTGCTAGGAATGGAAGCGACTCCGTCGCCGATCAGACCAAGCTCATTGATCGCGCCCTGCAGTTGGGATCGGTGCTTCTTAAGGCCGGTGAGCTCTCGGTGAGACAACGAGCCTCCAAGCACAACTCCATCGCCTGGGCTCTCCTTCTCGACCTCACCATCAAGGTGAAAGATCAACAATGCAAAACTTGTAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

101

Amino Acids

11.32

Weight (kDa)

9.3

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccII CGCG 1 cut(s) 159
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 14
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 3 cut(s) 84, 169, 240
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 3 cut(s) 35, 148, 199
AluI AGCT 3 cut(s) 35, 148, 199
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 181
AoxI GGCC 2 cut(s) 14, 189
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 206, 217, 253, 283
BanII GRGCYC 2 cut(s) 201, 247
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 201
BccI CCATC 2 cut(s) 242, 272
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 3 cut(s) 32, 36, 111
BfmI CTRYAG 1 cut(s) 164
BfrI CTTAAG 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 169, 240
Bse118I RCCGGY 1 cut(s) 191
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 84, 169, 240
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 16, 191
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 84, 169, 240
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 16, 191
Bsp1286I GDGCHC 2 cut(s) 201, 247
Bsp1407I TGTACA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 52, 136, 154, 173, 277
BspANI GGCC 2 cut(s) 16, 191
BspFNI CGCG 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 1 cut(s) 181
BspTI CTTAAG 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 5 cut(s) 52, 136, 154, 173, 277
Bst2UI CCWGG 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 5 cut(s) 55, 139, 157, 176, 280
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 5 cut(s) 52, 136, 154, 173, 277
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 164
BstUI CGCG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 16, 191
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 191
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 8 cut(s) 16, 35, 88, 148, 191, 199, 218, 245
CviKI_1 RGCY 8 cut(s) 16, 35, 88, 148, 191, 199, 218, 245
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 43
DpnI GATC 5 cut(s) 54, 138, 156, 175, 279
DpnII GATC 5 cut(s) 52, 136, 154, 173, 277
EaeI YGGCCR 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 201, 247
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 239
EcoT38I GRGCYC 2 cut(s) 201, 247
FokI GGATG 1 cut(s) 58
FriOI GRGCYC 2 cut(s) 201, 247
FspBI CTAG 3 cut(s) 32, 36, 111
GlaI GCGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 16, 191
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 161
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 192
HphI GGTGA 4 cut(s) 206, 217, 253, 283
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 79, 141
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 166, 288
HpyF3I CTNAG 1 cut(s) 43
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 5 cut(s) 52, 136, 154, 173, 277
LpnPI CCDG 4 cut(s) 176, 205, 226, 253
MaeI CTAG 3 cut(s) 32, 36, 111
MalI GATC 5 cut(s) 54, 138, 156, 175, 279
MboI GATC 5 cut(s) 52, 136, 154, 173, 277
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 201, 247
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 4 cut(s) 85, 92, 229, 269
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 159
NdeII GATC 5 cut(s) 52, 136, 154, 173, 277
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 240
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PstI CTGCAG 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 5 cut(s) 52, 136, 154, 173, 277
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 201, 247
SetI ASST 5 cut(s) 37, 150, 201, 261, 273
SfcI CTRYAG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 298
SspMI CTAG 3 cut(s) 32, 36, 111
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 239
TaqI TCGA 2 cut(s) 55, 255
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 68
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 185
XspI CTAG 3 cut(s) 32, 36, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.