pycom02g10120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000274
Physical Location & Seq
Reverse (-)
6993063 .. 6994490
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10120.5

Sequence Viewer

Length: 999 bp
ATGGGTGAAAACAAACATGCCTCATCCCCTGTGATCGCTACATGGATTGTAAGGTTGAAAAGGAAACAAAGGAAACCGAAACGCTTGACTGGGTTTGTTTATGATGAGATGAAATCTTGGAGAGAACCCAAAAAGGTGAAGCTTAATGAGATAGTACCTAGTGTTGTGAATCCCGCCGAAAATGATGAGATTGTAGACACTACTAAAGGGAAGGCTCAGATAGGATCAGAAGCTATTGGTCGTCACACAGTCAAAGGGAAACAAAGAATTGGTGTAACACTCGATCCTTCATGCATGTCAGTGTGGATGTACTTGTCAAATGAAGAACAAGATAGGATGCATCAATATTTTCTTTGCGCTGATTCTGGGGTTCCCTTCTGGAAAGGATCATACTCGGCTGTATATAAGGATGATTTGAGGGACCTGTTAACGGGGTCTGCTATAACGTGTAATGTCATTGATACTTTCGGGGAAATTTTGCTAGCTGAGTTGGGAAAGGAAGGAAGAATGAAAACCATTTCGCACATTATGACAACTTATAGCTGGGAATATCTGCAAAGAGGTGATGGGAAGAGTGTTGGTCAATTTCTGTTTGACCCCCTGTTAGATGTTTTATCGAGGGTGGACTATATCATTTTCCCAATGAGACATCATGATCAATTCCACTTCACTTTGTTAGTGCTACAAAAGGATGAGGAGCAATGGGTTCACTACGACCCAATGCGTTGTGTGACAGATACATCAAATGACCGGTGTTTTGCTGACGCGGAAAAATTGCGAGATGCTGTTACGATGTTCCTTCAATATAATAGTTGCATTGCTCCAGTTATGTTGAATGATGGTTATCGAATGAGACAATCCATAAGCGAAGGAGAAAGGTCAATCCAGTCACCCCTAATGCAGAGTGAGATACAAACATTACAATGGTTAATATCTGCAGACCCTAATTACCCATTGTGGCCATCGCTATCTTGCCCACGACAATTGGATGGCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

38.15

Weight (kDa)

6.26

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 767
AciI CCGC 2 cut(s) 174, 767
AclWI GGATC 3 cut(s) 232, 278, 394
AcoI YGGCCR 1 cut(s) 959
AcsI RAATTY 1 cut(s) 474
AfaI GTAC 2 cut(s) 156, 311
AfiI CCNNNNNNNGG 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 446
AgeI ACCGGT 1 cut(s) 750
AgsI TTSAA 3 cut(s) 58, 803, 835
AluBI AGCT 4 cut(s) 142, 233, 485, 543
AluI AGCT 4 cut(s) 142, 233, 485, 543
Alw26I GTCTC 2 cut(s) 640, 847
AlwI GGATC 3 cut(s) 232, 278, 394
AoxI GGCC 1 cut(s) 959
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AsiGI ACCGGT 1 cut(s) 750
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 4 cut(s) 17, 148, 575, 882
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 961
BccI CCATC 4 cut(s) 560, 833, 970, 983
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 640, 847
BfaI CTAG 2 cut(s) 159, 482
BfmI CTRYAG 1 cut(s) 936
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 2 cut(s) 372, 422
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 3 cut(s) 327, 349, 772
BmtI GCTAGC 1 cut(s) 485
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 807
BsaBI GATNNNNATC 1 cut(s) 843
BsaWI WCCGGW 1 cut(s) 750
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 3 cut(s) 94, 824, 886
Bse3DI GCAATG 2 cut(s) 707, 816
Bse8I GATNNNNATC 1 cut(s) 843
BseGI GGATG 6 cut(s) 23, 312, 342, 415, 697, 994
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 2 cut(s) 707, 816
BseMII CTCAG 2 cut(s) 230, 477
BseNI ACTGG 3 cut(s) 94, 824, 886
BseRI GAGGAG 1 cut(s) 710
BseYI CCCAGC 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 1 cut(s) 961
BshTI ACCGGT 1 cut(s) 750
BsiSI CCGG 1 cut(s) 751
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 640, 847
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 1 cut(s) 961
Bsp143I GATC 5 cut(s) 33, 224, 283, 386, 655
BspACI CCGC 2 cut(s) 174, 767
BspANI GGCC 1 cut(s) 961
BspCNI CTCAG 2 cut(s) 229, 478
BspFNI CGCG 1 cut(s) 767
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 372, 422
BspMAI CTGCAG 1 cut(s) 940
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 3 cut(s) 232, 278, 394
BsrDI GCAATG 2 cut(s) 707, 816
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 3 cut(s) 94, 824, 886
BssAI RCCGGY 1 cut(s) 750
BssMI GATC 5 cut(s) 33, 224, 283, 386, 655
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 216, 486
BstF5I GGATG 6 cut(s) 23, 312, 342, 415, 697, 994
BstFNI CGCG 1 cut(s) 767
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 5 cut(s) 36, 227, 286, 389, 658
BstMAI GTCTC 2 cut(s) 640, 847
BstMBI GATC 5 cut(s) 33, 224, 283, 386, 655
BstNSI RCATGY 2 cut(s) 20, 298
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 1 cut(s) 767
BsuRI GGCC 1 cut(s) 961
BtgZI GCGATG 1 cut(s) 948
BtsCI GGATG 6 cut(s) 23, 312, 342, 415, 697, 994
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 483
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 1 cut(s) 421
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 155, 310
CspAI ACCGGT 1 cut(s) 750
CspCI CAANNNNNGTGG 1 cut(s) 966
CviAII CATG 5 cut(s) 17, 42, 291, 295, 653
CviJI RGCY 8 cut(s) 142, 215, 233, 398, 485, 543, 961, 993
CviKI_1 RGCY 8 cut(s) 142, 215, 233, 398, 485, 543, 961, 993
CviQI GTAC 2 cut(s) 155, 310
DdeI CTNAG 2 cut(s) 216, 486
DpnI GATC 5 cut(s) 35, 226, 285, 388, 657
DpnII GATC 5 cut(s) 33, 224, 283, 386, 655
EaeI YGGCCR 1 cut(s) 959
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 421
EcoT22I ATGCAT 2 cut(s) 296, 342
FaeI CATG 5 cut(s) 20, 45, 294, 298, 656
FaqI GGGAC 1 cut(s) 434
FatI CATG 5 cut(s) 16, 41, 290, 294, 652
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 195
FokI GGATG 5 cut(s) 10, 319, 349, 422, 704
FspBI CTAG 2 cut(s) 159, 482
GlaI GCGC 1 cut(s) 358
GsaI CCCAGC 1 cut(s) 547
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 1 cut(s) 961
HapII CCGG 1 cut(s) 751
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 359
Hin1II CATG 5 cut(s) 20, 45, 294, 298, 656
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 169, 362
HpaI GTTAAC 1 cut(s) 429
HpaII CCGG 1 cut(s) 751
HphI GGTGA 4 cut(s) 17, 148, 575, 882
Hpy166II GTNNAC 4 cut(s) 196, 429, 625, 709
Hpy188I TCNGA 2 cut(s) 219, 229
Hpy188III TCNNGA 2 cut(s) 379, 653
Hpy8I GTNNAC 4 cut(s) 196, 429, 625, 709
HpyAV CCTTC 6 cut(s) 205, 297, 385, 494, 809, 863
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 6 cut(s) 294, 340, 556, 816, 901, 938
HpyF3I CTNAG 2 cut(s) 216, 486
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 5 cut(s) 20, 45, 294, 298, 656
HspAI GCGC 1 cut(s) 357
Ksp22I TGATCA 1 cut(s) 655
KspAI GTTAAC 1 cut(s) 429
Kzo9I GATC 5 cut(s) 33, 224, 283, 386, 655
LmnI GCTCC 2 cut(s) 697, 826
LweI GCATC 3 cut(s) 327, 349, 772
MaeI CTAG 2 cut(s) 159, 482
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 5 cut(s) 242, 274, 730, 787, 888
MalI GATC 5 cut(s) 35, 226, 285, 388, 657
MboI GATC 5 cut(s) 33, 224, 283, 386, 655
MboII GAAGA 3 cut(s) 335, 516, 583
MfeI CAATTG 1 cut(s) 983
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 7 cut(s) 267, 474, 584, 659, 773, 946, 983
MluNI TGGCCA 1 cut(s) 961
MnlI CCTC 5 cut(s) 31, 411, 554, 612, 688
Mox20I TGGCCA 1 cut(s) 961
Mph1103I ATGCAT 2 cut(s) 296, 342
MscI TGGCCA 1 cut(s) 961
MseI TTAA 3 cut(s) 144, 428, 929
MslI CAYNNNNRTG 2 cut(s) 299, 922
Msp20I TGGCCA 1 cut(s) 961
MspI CCGG 1 cut(s) 751
MunI CAATTG 1 cut(s) 983
MvnI CGCG 1 cut(s) 767
NdeII GATC 5 cut(s) 33, 224, 283, 386, 655
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 5 cut(s) 20, 45, 294, 298, 656
NlaIV GGNNCC 2 cut(s) 372, 422
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 3 cut(s) 242, 730, 888
NsiI ATGCAT 2 cut(s) 296, 342
NspI RCATGY 2 cut(s) 20, 298
PagI TCATGA 1 cut(s) 652
PfeI GAWTC 2 cut(s) 169, 362
PinAI ACCGGT 1 cut(s) 750
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 372, 422
PspPI GGNCC 1 cut(s) 421
PspPPI RGGWCCY 1 cut(s) 421
PstI CTGCAG 1 cut(s) 940
RsaI GTAC 2 cut(s) 156, 311
RsaNI GTAC 2 cut(s) 155, 310
RseI CAYNNNNRTG 2 cut(s) 299, 922
SaqAI TTAA 3 cut(s) 144, 428, 929
Sau3AI GATC 5 cut(s) 33, 224, 283, 386, 655
Sau96I GGNCC 1 cut(s) 421
SfaNI GCATC 3 cut(s) 327, 349, 772
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 2 cut(s) 299, 922
Sse9I AATT 7 cut(s) 267, 474, 584, 659, 773, 946, 983
SsiI CCGC 2 cut(s) 174, 767
SspI AATATT 1 cut(s) 347
SspMI CTAG 2 cut(s) 159, 482
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 449
TaqI TCGA 3 cut(s) 282, 617, 847
TasI AATT 7 cut(s) 267, 474, 584, 659, 773, 946, 983
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 2 cut(s) 169, 362
Tru1I TTAA 3 cut(s) 144, 428, 929
Tru9I TTAA 3 cut(s) 144, 428, 929
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 3 cut(s) 242, 730, 888
Tsp45I GTSAC 3 cut(s) 242, 730, 888
TspDTI ATGAA 4 cut(s) 125, 279, 336, 524
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 474
XceI RCATGY 2 cut(s) 20, 298
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 2 cut(s) 159, 482
Zsp2I ATGCAT 2 cut(s) 296, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.