Rh3DG118800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000274
Physical Location & Seq
Forward (+)
9979964 .. 9980511
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG118800.1

Sequence Viewer

Length: 330 bp
ATGGCGTCAAGTCCGTCTCTGACTCTGCATATTCACCTTCGGGGGCCTCCAAATCCACGACGAATCCAGGCTCAACTTGCCACAGAGGAACGTCGCTCTCTTCCGCAAGATCATCCTTCCGCTCACCAAGTACTCGCCGGAGACCATTTGGCTGATTATGTCGAATCTGGTACTAATATGGAGATGGTGAGCTCCAAATCAGAGACCACCGGAGAGAGTATTTCTTGCGATTTCTGCAATGAGCAGCCGGAGATGTTGTACTGTAAGGCCCACAAACTTCAAAAGATCTCTGAACTCTTCCTTTATACTCAGCGATCTTCGTTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.22

Weight (kDa)

6.03

Isoelectric Point (pI)

70.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 2 cut(s) 104, 120
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 132, 172, 260
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 3 cut(s) 21, 135, 197
AoxI GGCC 2 cut(s) 44, 267
ApeKI GCWGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 44, 268
AsuHPI GGTGA 3 cut(s) 26, 116, 199
BanII GRGCYC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 3 cut(s) 21, 135, 197
BglII AGATCT 1 cut(s) 285
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 44, 268
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 135, 197
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 2 cut(s) 46, 269
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 3 cut(s) 138, 210, 248
BsmAI GTCTC 3 cut(s) 21, 135, 197
BsmBI CGTCTC 1 cut(s) 21
BsnI GGCC 2 cut(s) 46, 269
Bso31I GGTCTC 2 cut(s) 135, 197
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 109, 285, 314, 324
BspACI CCGC 2 cut(s) 104, 120
BspANI GGCC 2 cut(s) 46, 269
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 45
BspTNI GGTCTC 2 cut(s) 135, 197
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 244
BssMI GATC 4 cut(s) 109, 285, 314, 324
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 2 cut(s) 105, 302
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 4 cut(s) 112, 288, 317, 327
BstMAI GTCTC 3 cut(s) 21, 135, 197
BstMBI GATC 4 cut(s) 109, 285, 314, 324
BstMWI GCNNNNNNNGC 2 cut(s) 77, 234
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 2 cut(s) 46, 269
BtsCI GGATG 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 44, 268
Csp6I GTAC 3 cut(s) 131, 171, 259
CviJI RGCY 6 cut(s) 46, 71, 152, 192, 247, 269
CviKI_1 RGCY 6 cut(s) 46, 71, 152, 192, 247, 269
CviQI GTAC 3 cut(s) 131, 171, 259
DdeI CTNAG 1 cut(s) 309
DpnI GATC 4 cut(s) 111, 287, 316, 326
DpnII GATC 4 cut(s) 109, 285, 314, 324
Eam1104I CTCTTC 2 cut(s) 105, 302
EarI CTCTTC 2 cut(s) 105, 302
Ecl136II GAGCTC 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 2 cut(s) 135, 197
Eco53kI GAGCTC 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 21
FaiI YATR 4 cut(s) 30, 159, 179, 306
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 2 cut(s) 46, 269
HapII CCGG 3 cut(s) 138, 210, 248
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 3 cut(s) 22, 63, 164
HpaII CCGG 3 cut(s) 138, 210, 248
HphI GGTGA 3 cut(s) 26, 116, 199
Hpy188I TCNGA 4 cut(s) 21, 202, 292, 329
Hpy99I CGWCG 2 cut(s) 63, 96
HpyAV CCTTC 2 cut(s) 47, 126
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 28, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 234
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 91
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 109, 285, 314, 324
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 6 cut(s) 53, 80, 151, 153, 223, 261
Lsp1109I GCAGC 1 cut(s) 256
MaeII ACGT 1 cut(s) 91
MalI GATC 4 cut(s) 111, 287, 316, 326
MbiI CCGCTC 1 cut(s) 122
MboI GATC 4 cut(s) 109, 285, 314, 324
MboII GAAGA 3 cut(s) 92, 289, 309
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 2 cut(s) 57, 79
MspI CCGG 3 cut(s) 138, 210, 248
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 77, 234
NdeII GATC 4 cut(s) 109, 285, 314, 324
NlaIV GGNNCC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 63, 164
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 44, 268
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 3 cut(s) 132, 172, 260
RsaNI GTAC 3 cut(s) 131, 171, 259
SacI GAGCTC 1 cut(s) 194
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 4 cut(s) 109, 285, 314, 324
Sau96I GGNCC 2 cut(s) 44, 268
ScaI AGTACT 1 cut(s) 132
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 194
SetI ASST 3 cut(s) 39, 94, 194
SsiI CCGC 2 cut(s) 104, 120
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 162
TatI WGTACW 2 cut(s) 130, 258
TfiI GAWTC 2 cut(s) 63, 164
TseI GCWGC 1 cut(s) 244
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.