RchiOBHm_Chr7g0238631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000274
Physical Location & Seq
Reverse (-)
64108938 .. 64110863
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21383

Sequence Viewer

Length: 348 bp
ATGCTAGAACAAGGATGCCGAATGAAATTTGATGAAAAGAACAGCTCAGAAGAACAATTGAAACTGATGGAAGTTCCACTGACTGAAACTGAGATAGAAAGCATAAAATGGATCAGGGATAGCTATAATGGAAAAATGAATGTGCAAGACATTAAAAGTTGCCCTCAACAAGGAGAAGACTCATTGGATTGCAGGCGTTTTGTGATGTACAACATGGAGAAAATTTCGAAAAATGATAGAGTTCCAAGCAAACTAACAAAGGATGATATTCTGAAATTTAGAGCTCATGTGGTAAAGTCATTTGCAGAAAGTAGGCACGGCTGGAACTCAACACACGATGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.56

Weight (kDa)

5.93

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 346
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 3 cut(s) 26, 222, 275
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 3 cut(s) 45, 123, 284
AluI AGCT 3 cut(s) 45, 123, 284
Alw21I GWGCWC 1 cut(s) 286
AlwI GGATC 1 cut(s) 119
ApoI RAATTY 3 cut(s) 26, 222, 275
AsuII TTCGAA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 286
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 334
BfaI CTAG 1 cut(s) 5
BmsI GCATC 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 20, 268
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 60, 81
BsiHKAI GWGCWC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 59, 82
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 207
BssMI GATC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 46, 90
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 20, 268
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 20, 268
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 214, 287
CviJI RGCY 4 cut(s) 45, 123, 284, 321
CviKI_1 RGCY 4 cut(s) 45, 123, 284, 321
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 46, 90
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 2 cut(s) 217, 290
FaiI YATR 5 cut(s) 104, 126, 215, 288, 346
FatI CATG 2 cut(s) 213, 286
FokI GGATG 2 cut(s) 27, 275
FriOI GRGCYC 1 cut(s) 286
FspBI CTAG 1 cut(s) 5
Hin1II CATG 2 cut(s) 217, 290
HinfI GANTC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 49, 273
HpyCH4V TGCA 3 cut(s) 145, 192, 305
HpyF3I CTNAG 2 cut(s) 46, 90
Hsp92II CATG 2 cut(s) 217, 290
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 3 cut(s) 100, 178, 307
LweI GCATC 1 cut(s) 5
MaeI CTAG 1 cut(s) 5
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 62, 188
MfeI CAATTG 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 5 cut(s) 26, 56, 222, 275, 341
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 1 cut(s) 174
MseI TTAA 1 cut(s) 153
MunI CAATTG 1 cut(s) 56
NdeII GATC 1 cut(s) 111
NlaIII CATG 2 cut(s) 217, 290
NspV TTCGAA 1 cut(s) 227
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PsiI TTATAA 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 286
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 111
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 286
SetI ASST 3 cut(s) 47, 125, 286
SfaNI GCATC 1 cut(s) 5
SfuI TTCGAA 1 cut(s) 227
Sse9I AATT 5 cut(s) 26, 56, 222, 275, 341
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 286
TaqI TCGA 1 cut(s) 227
TasI AATT 5 cut(s) 26, 56, 222, 275, 341
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 3 cut(s) 38, 48, 152
TspRI CASTG 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 3 cut(s) 26, 222, 275
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.