FvH4_7g04250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000274
Physical Location & Seq
Forward (+)
4851228 .. 4853019
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04250.t2

Sequence Viewer

Length: 762 bp
ATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGCTGACGAAATTTCTCAGCAAGATTCTCAGTCTATCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAACCCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCGATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACGTCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGGAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGCGTGAAAATGAGATACACAGTTTCCACTATCATAATAAAAAGAAACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.5

Weight (kDa)

9.31

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 133 - 197 4.9e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 2 cut(s) 117, 513
AciI CCGC 1 cut(s) 424
AclI AACGTT 1 cut(s) 650
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 431, 686
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 117, 513
AgsI TTSAA 4 cut(s) 266, 294, 536, 685
AluBI AGCT 5 cut(s) 53, 463, 484, 688, 759
AluI AGCT 5 cut(s) 53, 463, 484, 688, 759
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 135
AspA2I CCTAGG 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 230, 715
AvaII GGWCC 1 cut(s) 566
AvrII CCTAGG 1 cut(s) 95
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 576
BccI CCATC 1 cut(s) 308
BfaI CTAG 2 cut(s) 96, 287
BfmI CTRYAG 1 cut(s) 381
BlnI CCTAGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 43, 421
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 95, 639
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 513
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 95, 639
BseGI GGATG 2 cut(s) 381, 540
BseLI CCNNNNNNNGG 2 cut(s) 117, 513
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 80, 92, 590
BshNI GGYRCC 1 cut(s) 41
BslFI GGGAC 2 cut(s) 339, 570
BslI CCNNNNNNNGG 2 cut(s) 117, 513
BsmFI GGGAC 2 cut(s) 339, 570
Bsp143I GATC 2 cut(s) 305, 546
BspACI CCGC 1 cut(s) 424
BspCNI CTCAG 3 cut(s) 79, 91, 589
BspLI GGNNCC 2 cut(s) 43, 421
BspMAI CTGCAG 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 95, 639
BssMI GATC 2 cut(s) 305, 546
BssT1I CCWWGG 2 cut(s) 95, 639
Bst4CI ACNGT 1 cut(s) 730
Bst6I CTCTTC 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 66, 78, 576, 689
BstF5I GGATG 2 cut(s) 381, 540
BstKTI GATC 2 cut(s) 308, 549
BstMBI GATC 2 cut(s) 305, 546
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 3 cut(s) 21, 154, 409
BstSFI CTRYAG 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 247
BstXI CCANNNNNNTGG 2 cut(s) 352, 595
BtsCI GGATG 2 cut(s) 381, 540
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 662
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 619
CviAII CATG 7 cut(s) 18, 117, 140, 151, 333, 406, 439
CviJI RGCY 6 cut(s) 53, 420, 463, 484, 688, 759
CviKI_1 RGCY 6 cut(s) 53, 420, 463, 484, 688, 759
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 4 cut(s) 66, 78, 576, 689
DpnI GATC 2 cut(s) 307, 548
DpnII GATC 2 cut(s) 305, 546
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 95, 639
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 2 cut(s) 431, 686
EcoT14I CCWWGG 2 cut(s) 95, 639
ErhI CCWWGG 2 cut(s) 95, 639
FaeI CATG 7 cut(s) 21, 120, 143, 154, 336, 409, 442
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 339, 570
FatI CATG 7 cut(s) 17, 116, 139, 150, 332, 405, 438
FauI CCCGC 1 cut(s) 431
FokI GGATG 2 cut(s) 388, 527
FspBI CTAG 2 cut(s) 96, 287
Hin1II CATG 7 cut(s) 21, 120, 143, 154, 336, 409, 442
HindIII AAGCTT 3 cut(s) 461, 482, 686
HinfI GANTC 2 cut(s) 74, 290
HphI GGTGA 2 cut(s) 230, 715
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 2 cut(s) 520, 544
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 138, 292
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4IV ACGT 2 cut(s) 583, 650
HpyCH4V TGCA 4 cut(s) 21, 106, 154, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 4 cut(s) 66, 78, 576, 689
HpySE526I ACGT 2 cut(s) 583, 650
Hsp92II CATG 7 cut(s) 21, 120, 143, 154, 336, 409, 442
Kzo9I GATC 2 cut(s) 305, 546
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 2 cut(s) 425, 447
LpnPI CCDG 1 cut(s) 430
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 96, 287
MaeII ACGT 2 cut(s) 583, 650
MalI GATC 2 cut(s) 307, 548
MboI GATC 2 cut(s) 305, 546
MboII GAAGA 7 cut(s) 128, 247, 315, 424, 679, 682, 718
MluCI AATT 1 cut(s) 60
MnlI CCTC 2 cut(s) 585, 637
MroXI GAANNNNTTC 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 305, 546
NlaIII CATG 7 cut(s) 21, 120, 143, 154, 336, 409, 442
NlaIV GGNNCC 2 cut(s) 43, 421
NspI RCATGY 3 cut(s) 21, 154, 409
PaeI GCATGC 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 701
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 74, 290
PflMI CCANNNNNTGG 2 cut(s) 117, 513
Psp1406I AACGTT 1 cut(s) 650
PspN4I GGNNCC 2 cut(s) 43, 421
PspPI GGNCC 1 cut(s) 566
PstI CTGCAG 1 cut(s) 385
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 701
Sau3AI GATC 2 cut(s) 305, 546
Sau96I GGNCC 1 cut(s) 566
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 138
SphI GCATGC 1 cut(s) 21
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 424
SspMI CTAG 2 cut(s) 96, 287
StyI CCWWGG 2 cut(s) 95, 639
TaaI ACNGT 1 cut(s) 730
TaiI ACGT 2 cut(s) 586, 653
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 2 cut(s) 74, 290
TscAI CASTG 2 cut(s) 18, 669
TspDTI ATGAA 4 cut(s) 128, 311, 455, 485
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 18, 669
Van91I CCANNNNNTGG 2 cut(s) 117, 513
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 1 cut(s) 60
XceI RCATGY 3 cut(s) 21, 154, 409
XmaJI CCTAGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 96, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.