FvH4_3g06730

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000274
Physical Location & Seq
Forward (+)
3870737 .. 3872909
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06730.t1

Sequence Viewer

Length: 1569 bp
ATGGATAAGCGAAAAATGAACGCAGTTAATGAAGAAGGAAAGAAGAGAAAGAGGATAGTTGATGAAGGAGCAAAGAAGAGAAAGAGGACAGTGGATGAAGAGGCTGATGGTGTACTGCTGTCCAAACTATTTCTGGGACAGGAAAAAAGAAGGAGAAAACAAGAGAAGAAAAATAAGATAGAGGAGCCAAAGAAGAAGAAGGCCTTGAAGAAGACATCTCAAATAGAGGAGGAGGAAGAAGAAGAAGATGAGACAGAGAAGAAGAAATCAAATCAGTTCAGATCAACATGGCCTGAAGTGGACAGTTTTAGAGAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCCCGTTTGGTTTACTTTTTGAAGGATTTTATGAGCATGTCAACAAAAAGCACTTTGGGAAGTCGAACAAGCTCATTGAAACAATCGCCGACACTTACAATGAAAAGCTTGATGCATTTGTGATCGGGGAAGGAAGATACAGAATCACAAGCAGAGATGTATCTAAGATTCTAGGACTTCCTAGAAAAGGTGGCTCCTTTGAGACAATGGAAGTGGAAGAGAATGCAGCAGAGACATTATTTGGGAAAAACAAAAGAGTCACAAAAAAGTGTGTGATGGACGTTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGATGAAGAAAGAAGAATGAAGAGAAAAAATTTGGTTAGGCTGCTCATTTTAGAAATTTGCATAAAGTTTCTATTTGCAAATGGGGGAGGGAGTGTCTCAAATGAGCTGGTAAATGCAGTATGGGGGAACATACAGAGCTGTGGATGGGCTCAAGAGGTTAGAAGATTTTTGTCGGGTTGTTTAAGACAACGACTAAAATCAAAGGGTAAGGGGTTGAGCGGGTTGAACACAGGAGGCTGTGCACACTTAATTCTGTATTGGCTCTGTGAGAAGACAAACGCCATAAAGTCGATTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTACCCAAGAATGCTGAATTCAAAACATTGAAGCAACTGTTCGCTGGAATCAAGTCTGATCCAGAAGAAACAGATTGTGAATCTGAAGCAGAAGAAGAAGAAACATGGCAGGCAGCAGAGGAAGGAGAAAGGCCACCGTCCTCTCTAATATCCGGTCAAAGCCAAAAAGCAAAGGAGGTTGAAATGAGACGGCTAACAGAGGAGAACGAAAGGCTGCGCTGTCAAACTGAAAGCTTGAAAGAGGAAATGAGAAGCATGGCAGAGGACTATGAATCAAGGCAGACAGAACTACAGGAGAAGATGGAAAATGCAGTACAGGATTTGATGATTGAGAGGTTAATTAACAATGAAACAAGGTTGCAGAATGAAAAACTCAATGAAGAACTGAAGAAGTTGCAAGCTTTGGTGGCGGCATTAGCACCAAACTCTCAAGATGAGAGAGCTCTGGAAAGCAATGAAGATGATCAGGATCCTGAAGGAGGAGCAAACAAGGGAGGAAAAAACAATGAAGATCTGAAGGACAAGGAAGCTGATAAGGCAGCTGAAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

523

Amino Acids

60.13

Weight (kDa)

5.74

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 888
AciI CCGC 2 cut(s) 888, 1424
AclWI GGATC 3 cut(s) 1067, 1478, 1491
AcsI RAATTY 3 cut(s) 697, 723, 1031
AcuI CTGAAG 5 cut(s) 315, 1119, 1421, 1509, 1550
AfaI GTAC 2 cut(s) 114, 1329
AfiI CCNNNNNNNGG 2 cut(s) 539, 1493
AgsI TTSAA 9 cut(s) 208, 374, 431, 895, 965, 1036, 1045, 1196, 1252
Alw21I GWGCWC 3 cut(s) 648, 913, 1459
Alw26I GTCTC 5 cut(s) 245, 548, 578, 769, 1195
Alw44I GTGCAC 1 cut(s) 909
AlwI GGATC 3 cut(s) 1067, 1478, 1491
AoxI GGCC 4 cut(s) 201, 290, 352, 1145
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 6 cut(s) 578, 658, 709, 1127, 1228, 1553
ApoI RAATTY 3 cut(s) 697, 723, 1031
AspLEI GCGC 1 cut(s) 1233
AspS9I GGNCC 3 cut(s) 353, 652, 1003
AvaII GGWCC 2 cut(s) 652, 1003
BaeGI GKGCMC 1 cut(s) 913
BamHI GGATCC 1 cut(s) 1483
BanII GRGCYC 3 cut(s) 648, 820, 1459
BbsI GAAGAC 2 cut(s) 218, 947
Bbv12I GWGCWC 3 cut(s) 648, 913, 1459
BbvI GCAGC 6 cut(s) 590, 670, 696, 1139, 1215, 1565
BccI CCATC 4 cut(s) 101, 622, 807, 1309
BceAI ACGGC 1 cut(s) 1220
BclI TGATCA 1 cut(s) 1477
BcoDI GTCTC 5 cut(s) 245, 548, 578, 769, 1195
BfaI CTAG 2 cut(s) 524, 534
BfmI CTRYAG 1 cut(s) 1304
BglII AGATCT 1 cut(s) 1525
BisI GCNGC 7 cut(s) 579, 659, 710, 1128, 1229, 1425, 1554
BlsI GCNGC 7 cut(s) 580, 660, 711, 1129, 1230, 1426, 1555
Bme18I GGWCC 2 cut(s) 652, 1003
BmgT120I GGNCC 3 cut(s) 353, 652, 1003
BmiI GGNNCC 4 cut(s) 186, 547, 1004, 1485
BmsI GCATC 1 cut(s) 454
BpiI GAAGAC 2 cut(s) 218, 947
BpuEI CTTGAG 3 cut(s) 632, 804, 1428
BsaBI GATNNNNATC 1 cut(s) 1482
BsaWI WCCGGW 1 cut(s) 1166
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 1493
Bse3DI GCAATG 1 cut(s) 1474
Bse8I GATNNNNATC 1 cut(s) 1482
BseGI GGATG 3 cut(s) 100, 818, 982
BseJI GATNNNNATC 1 cut(s) 1482
BseLI CCNNNNNNNGG 2 cut(s) 539, 1493
BseMI GCAATG 1 cut(s) 1474
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 5 cut(s) 197, 242, 245, 1229, 1509
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 6 cut(s) 590, 670, 696, 1139, 1215, 1565
BshFI GGCC 4 cut(s) 203, 292, 354, 1147
BsiHKAI GWGCWC 3 cut(s) 648, 913, 1459
BsiSI CCGG 1 cut(s) 1167
BslFI GGGAC 2 cut(s) 150, 1016
BslI CCNNNNNNNGG 2 cut(s) 539, 1493
BsmAI GTCTC 5 cut(s) 245, 548, 578, 769, 1195
BsmBI CGTCTC 1 cut(s) 1195
BsmFI GGGAC 2 cut(s) 150, 1016
BsmI GAATGC 2 cut(s) 580, 1030
BsnI GGCC 4 cut(s) 203, 292, 354, 1147
Bsp1286I GDGCHC 4 cut(s) 648, 820, 913, 1459
Bsp143I GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
BspACI CCGC 2 cut(s) 888, 1424
BspANI GGCC 4 cut(s) 203, 292, 354, 1147
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 4 cut(s) 186, 547, 1004, 1485
BspPI GGATC 3 cut(s) 1067, 1478, 1491
BsrBI CCGCTC 1 cut(s) 888
BsrDI GCAATG 1 cut(s) 1474
BssMI GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
Bst4CI ACNGT 4 cut(s) 91, 305, 1053, 1152
Bst6I CTCTTC 5 cut(s) 38, 71, 93, 564, 683
BstC8I GCNNGC 2 cut(s) 1125, 1413
BstDEI CTNAG 2 cut(s) 344, 516
BstENI CCTNNNNNAGG 2 cut(s) 537, 1491
BstF5I GGATG 3 cut(s) 100, 818, 982
BstHHI GCGC 1 cut(s) 1233
BstKTI GATC 6 cut(s) 284, 477, 1075, 1480, 1486, 1528
BstMAI GTCTC 5 cut(s) 245, 548, 578, 769, 1195
BstMBI GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
BstMWI GCNNNNNNNGC 3 cut(s) 1421, 1430, 1550
BstNSI RCATGY 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 1304
BstSLI GKGCMC 1 cut(s) 913
BstV1I GCAGC 6 cut(s) 590, 670, 696, 1139, 1215, 1565
BstV2I GAAGAC 2 cut(s) 218, 947
BstX2I RGATCY 2 cut(s) 1483, 1525
BstYI RGATCY 2 cut(s) 1483, 1525
BsuRI GGCC 4 cut(s) 203, 292, 354, 1147
BtsCI GGATG 3 cut(s) 100, 818, 982
BtsIMutI CAGTG 2 cut(s) 96, 332
Cac8I GCNNGC 2 cut(s) 1125, 1413
CfoI GCGC 1 cut(s) 1233
Cfr13I GGNCC 3 cut(s) 353, 652, 1003
Csp6I GTAC 2 cut(s) 113, 1328
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviAII CATG 4 cut(s) 288, 389, 1119, 1270
CviQI GTAC 2 cut(s) 113, 1328
DdeI CTNAG 2 cut(s) 344, 516
DpnI GATC 6 cut(s) 283, 476, 1074, 1479, 1485, 1527
DpnII GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
Eam1104I CTCTTC 5 cut(s) 38, 71, 93, 564, 683
EarI CTCTTC 5 cut(s) 38, 71, 93, 564, 683
Ecl136II GAGCTC 2 cut(s) 646, 1457
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 3 cut(s) 648, 820, 1459
Eco47I GGWCC 2 cut(s) 652, 1003
Eco53kI GAGCTC 2 cut(s) 646, 1457
Eco57I CTGAAG 5 cut(s) 315, 1119, 1421, 1509, 1550
EcoICRI GAGCTC 2 cut(s) 646, 1457
EcoNI CCTNNNNNAGG 2 cut(s) 537, 1491
EcoO109I RGGNCCY 1 cut(s) 1003
EcoRI GAATTC 1 cut(s) 1031
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 3 cut(s) 648, 820, 1459
Esp3I CGTCTC 1 cut(s) 1195
FaeI CATG 4 cut(s) 291, 392, 1122, 1273
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 150, 1016
FatI CATG 4 cut(s) 287, 388, 1118, 1269
FauI CCCGC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 1477
Fnu4HI GCNGC 7 cut(s) 579, 659, 710, 1128, 1229, 1425, 1554
FokI GGATG 3 cut(s) 107, 825, 989
FriOI GRGCYC 3 cut(s) 648, 820, 1459
Fsp4HI GCNGC 7 cut(s) 579, 659, 710, 1128, 1229, 1425, 1554
FspBI CTAG 2 cut(s) 524, 534
GlaI GCGC 1 cut(s) 1232
GluI GCNGC 7 cut(s) 579, 659, 710, 1128, 1229, 1425, 1554
HaeIII GGCC 4 cut(s) 203, 292, 354, 1147
HapII CCGG 1 cut(s) 1167
HhaI GCGC 1 cut(s) 1233
Hin1II CATG 4 cut(s) 291, 392, 1122, 1273
Hin6I GCGC 1 cut(s) 1231
HinP1I GCGC 1 cut(s) 1231
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 3 cut(s) 458, 1246, 1413
HinfI GANTC 6 cut(s) 495, 520, 609, 1062, 1094, 1286
HpaII CCGG 1 cut(s) 1167
Hpy166II GTNNAC 5 cut(s) 113, 301, 365, 394, 911
Hpy188I TCNGA 4 cut(s) 281, 1072, 1099, 1530
Hpy188III TCNNGA 6 cut(s) 821, 1076, 1445, 1460, 1481, 1487
Hpy8I GTNNAC 5 cut(s) 113, 301, 365, 394, 911
HpyCH4III ACNGT 4 cut(s) 91, 305, 1053, 1152
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 9 cut(s) 467, 578, 729, 746, 785, 911, 1325, 1375, 1411
HpyF10VI GCNNNNNNNGC 3 cut(s) 1421, 1430, 1550
HpyF3I CTNAG 2 cut(s) 344, 516
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 4 cut(s) 291, 392, 1122, 1273
HspAI GCGC 1 cut(s) 1231
Ksp22I TGATCA 1 cut(s) 1477
Kzo9I GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
LmnI GCTCC 4 cut(s) 68, 184, 551, 1496
Lsp1109I GCAGC 6 cut(s) 590, 670, 696, 1139, 1215, 1565
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 524, 534
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 610
MalI GATC 6 cut(s) 283, 476, 1074, 1479, 1485, 1527
MbiI CCGCTC 1 cut(s) 888
MboI GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
MflI RGATCY 2 cut(s) 1483, 1525
MhlI GDGCHC 4 cut(s) 648, 820, 913, 1459
MluCI AATT 5 cut(s) 697, 723, 918, 1031, 1353
MlyI GAGTC 1 cut(s) 618
Mph1103I ATGCAT 1 cut(s) 469
MseI TTAA 6 cut(s) 27, 638, 851, 917, 1352, 1356
MspA1I CMGCKG 1 cut(s) 1556
MspI CCGG 1 cut(s) 1167
Mva1269I GAATGC 2 cut(s) 580, 1030
MwoI GCNNNNNNNGC 3 cut(s) 1421, 1430, 1550
NdeII GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
NlaIII CATG 4 cut(s) 291, 392, 1122, 1273
NlaIV GGNNCC 4 cut(s) 186, 547, 1004, 1485
NmuCI GTSAC 1 cut(s) 610
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 392
PacI TTAATTAA 1 cut(s) 1356
PceI AGGCCT 1 cut(s) 203
PctI GAATGC 2 cut(s) 580, 1030
PfeI GAWTC 5 cut(s) 495, 520, 1062, 1094, 1286
PkrI GCNGC 7 cut(s) 580, 660, 711, 1129, 1230, 1426, 1555
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PpuMI RGGWCCY 1 cut(s) 1003
Psp124BI GAGCTC 2 cut(s) 648, 1459
Psp5II RGGWCCY 1 cut(s) 1003
PspN4I GGNNCC 4 cut(s) 186, 547, 1004, 1485
PspPI GGNCC 3 cut(s) 353, 652, 1003
PspPPI RGGWCCY 1 cut(s) 1003
PsuI RGATCY 2 cut(s) 1483, 1525
PvuII CAGCTG 1 cut(s) 1556
RsaI GTAC 2 cut(s) 114, 1329
RsaNI GTAC 2 cut(s) 113, 1328
SacI GAGCTC 2 cut(s) 648, 1459
SaqAI TTAA 6 cut(s) 27, 638, 851, 917, 1352, 1356
SatI GCNGC 7 cut(s) 579, 659, 710, 1128, 1229, 1425, 1554
Sau3AI GATC 6 cut(s) 281, 474, 1072, 1477, 1483, 1525
Sau96I GGNCC 3 cut(s) 353, 652, 1003
SchI GAGTC 1 cut(s) 618
SduI GDGCHC 4 cut(s) 648, 820, 913, 1459
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 1304
SinI GGWCC 2 cut(s) 652, 1003
SmlI CTYRAG 3 cut(s) 647, 819, 1443
SmoI CTYRAG 3 cut(s) 647, 819, 1443
Sse9I AATT 5 cut(s) 697, 723, 918, 1031, 1353
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 2 cut(s) 888, 1424
SspMI CTAG 2 cut(s) 524, 534
SstI GAGCTC 2 cut(s) 648, 1459
StuI AGGCCT 1 cut(s) 203
TaaI ACNGT 4 cut(s) 91, 305, 1053, 1152
TaiI ACGT 1 cut(s) 636
TaqI TCGA 2 cut(s) 416, 959
TasI AATT 5 cut(s) 697, 723, 918, 1031, 1353
TatI WGTACW 2 cut(s) 112, 1327
TauI GCSGC 1 cut(s) 1427
TfiI GAWTC 5 cut(s) 495, 520, 1062, 1094, 1286
Tru1I TTAA 6 cut(s) 27, 638, 851, 917, 1352, 1356
Tru9I TTAA 6 cut(s) 27, 638, 851, 917, 1352, 1356
TscAI CASTG 2 cut(s) 96, 339
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 6 cut(s) 578, 658, 709, 1127, 1228, 1553
Tsp45I GTSAC 1 cut(s) 610
TspRI CASTG 2 cut(s) 96, 339
VneI GTGCAC 1 cut(s) 909
VpaK11BI GGWCC 2 cut(s) 652, 1003
XagI CCTNNNNNAGG 2 cut(s) 537, 1491
XapI RAATTY 3 cut(s) 697, 723, 1031
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 2 cut(s) 524, 534
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.