FvH4_6g34230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Forward (+)
27011638 .. 27012162
525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34230.t1

Sequence Viewer

Length: 525 bp
ATGGATAAGCGAAAAATGAACGCAGTTAATGAAGAAGGAAAGAAGAGAAAGAGGATAGTTGATGAAGGAGCAAAGAAGAGAAAGAGGACAGTGGATGAAGAGGCTGATGGTGTACTGCTGTCCAAACTATTCCTGGGACAGGAAAAAAGGAGAAAACAAGAGAAAAAAAATAAGATAGAGGAGCCAAAGAAGAAGAAGGCCTTGAAGAAGACATCTCAAATAGAGGAGGAGGAAGAAGAAGAAGATGAGACAGAGAAGAAGAAATCAAATCAGTTCAGATCAACATGGCCTGGAGTGGACAGTTTTAGAGAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCCCGTTTGGTTTACTTTTTGAAGGATTTTATGAGCATGTCAACAAAAATCACTTTGGGAAGTCGAACAAGCTCATTGAAACAATCGCCGACACTTACAATGAAAAGCTTGATGCATTTGTGATCGGGGAAGGAAGATACAGAATCACAAGCAGAGATGTATCTGAGATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.41

Weight (kDa)

8.55

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 205, 371, 428
AjnI CCWGG 2 cut(s) 132, 289
AluBI AGCT 3 cut(s) 340, 421, 457
AluI AGCT 3 cut(s) 340, 421, 457
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 3 cut(s) 198, 287, 349
AspS9I GGNCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 215
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 134, 291
BcoDI GTCTC 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 134, 291
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 134, 291
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseBI CCWGG 2 cut(s) 134, 291
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 332, 504
BseRI GAGGAG 3 cut(s) 194, 239, 242
BshFI GGCC 3 cut(s) 200, 289, 351
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 3 cut(s) 200, 289, 351
Bsp143I GATC 2 cut(s) 278, 471
BspANI GGCC 3 cut(s) 200, 289, 351
BspCNI CTCAG 2 cut(s) 333, 505
BspLI GGNNCC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 278, 471
Bst2UI CCWGG 2 cut(s) 134, 291
Bst4CI ACNGT 2 cut(s) 91, 302
Bst6I CTCTTC 3 cut(s) 38, 71, 93
BstDEI CTNAG 2 cut(s) 341, 513
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 281, 474
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 278, 471
BstNI CCWGG 2 cut(s) 134, 291
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 132, 289
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 200, 289, 351
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 96, 329
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 113
CviAII CATG 2 cut(s) 285, 386
CviJI RGCY 8 cut(s) 104, 184, 200, 289, 340, 351, 421, 457
CviKI_1 RGCY 8 cut(s) 104, 184, 200, 289, 340, 351, 421, 457
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 341, 513
DpnI GATC 2 cut(s) 280, 473
DpnII GATC 2 cut(s) 278, 471
Eam1104I CTCTTC 3 cut(s) 38, 71, 93
EarI CTCTTC 3 cut(s) 38, 71, 93
Eco147I AGGCCT 1 cut(s) 200
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 132, 289
EcoT22I ATGCAT 1 cut(s) 466
FaeI CATG 2 cut(s) 288, 389
FaiI YATR 4 cut(s) 286, 381, 387, 523
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 284, 385
FokI GGATG 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 3 cut(s) 200, 289, 351
Hin1II CATG 2 cut(s) 288, 389
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 492, 517
Hpy166II GTNNAC 4 cut(s) 113, 298, 362, 391
Hpy188I TCNGA 2 cut(s) 278, 514
Hpy8I GTNNAC 4 cut(s) 113, 298, 362, 391
HpyAV CCTTC 5 cut(s) 29, 59, 190, 365, 473
HpyCH4III ACNGT 2 cut(s) 91, 302
HpyCH4V TGCA 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 341, 513
Hsp92II CATG 2 cut(s) 288, 389
Kzo9I GATC 2 cut(s) 278, 471
LmnI GCTCC 2 cut(s) 68, 181
LpnPI CCDG 5 cut(s) 119, 125, 146, 276, 303
LweI GCATC 1 cut(s) 451
MalI GATC 2 cut(s) 280, 473
MboI GATC 2 cut(s) 278, 471
MnlI CCTC 7 cut(s) 45, 78, 94, 172, 217, 220, 223
Mph1103I ATGCAT 1 cut(s) 466
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 134, 291
MvaI CCWGG 2 cut(s) 134, 291
NdeII GATC 2 cut(s) 278, 471
NlaIII CATG 2 cut(s) 288, 389
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 200
PfeI GAWTC 2 cut(s) 492, 517
Psp6I CCWGG 2 cut(s) 132, 289
PspGI CCWGG 2 cut(s) 132, 289
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 2 cut(s) 278, 471
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 134, 291
SetI ASST 3 cut(s) 342, 423, 459
SfaNI GCATC 1 cut(s) 451
SseBI AGGCCT 1 cut(s) 200
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 132, 289
TaaI ACNGT 2 cut(s) 91, 302
TaqI TCGA 1 cut(s) 413
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 2 cut(s) 492, 517
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 2 cut(s) 96, 336
TspDTI ATGAA 6 cut(s) 32, 45, 78, 111, 336, 465
TspRI CASTG 2 cut(s) 96, 336
XagI CCTNNNNNAGG 1 cut(s) 137
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.