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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1087 |
| AccII | CGCG | 1 cut(s) | 907 |
| AciI | CCGC | 3 cut(s) | 323, 479, 896 |
| AclWI | GGATC | 5 cut(s) | 377, 390, 482, 495, 1235 |
| AcoI | YGGCCR | 1 cut(s) | 672 |
| AcsI | RAATTY | 3 cut(s) | 610, 766, 1021 |
| AcuI | CTGAAG | 5 cut(s) | 320, 408, 449, 513, 582 |
| AfaI | GTAC | 1 cut(s) | 228 |
| AfeI | AGCGCT | 1 cut(s) | 724 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 392 |
| AgsI | TTSAA | 6 cut(s) | 95, 151, 603, 632, 788, 1027 |
| AjnI | CCWGG | 1 cut(s) | 965 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 751, 783, 971, 1003 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| Alw26I | GTCTC | 2 cut(s) | 94, 1105 |
| AlwI | GGATC | 5 cut(s) | 377, 390, 482, 495, 1235 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1121 |
| Aor51HI | AGCGCT | 1 cut(s) | 724 |
| AoxI | GGCC | 3 cut(s) | 44, 672, 1247 |
| ApeKI | GCWGC | 6 cut(s) | 26, 127, 452, 518, 578, 581 |
| ApoI | RAATTY | 3 cut(s) | 610, 766, 1021 |
| AseI | ATTAAT | 1 cut(s) | 1128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1022 |
| AspLEI | GCGC | 3 cut(s) | 132, 725, 907 |
| AsuHPI | GGTGA | 2 cut(s) | 867, 1003 |
| BamHI | GGATCC | 2 cut(s) | 382, 487 |
| BanII | GRGCYC | 1 cut(s) | 358 |
| BbsI | GAAGAC | 1 cut(s) | 780 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BbvI | GCAGC | 6 cut(s) | 38, 114, 464, 530, 590, 593 |
| BccI | CCATC | 2 cut(s) | 208, 1060 |
| BceAI | ACGGC | 1 cut(s) | 119 |
| BciT130I | CCWGG | 1 cut(s) | 967 |
| BclI | TGATCA | 1 cut(s) | 376 |
| BcoDI | GTCTC | 2 cut(s) | 94, 1105 |
| BfaI | CTAG | 2 cut(s) | 1038, 1133 |
| BfmI | CTRYAG | 1 cut(s) | 203 |
| BfoI | RGCGCY | 1 cut(s) | 726 |
| BfuAI | ACCTGC | 1 cut(s) | 1087 |
| BglII | AGATCT | 2 cut(s) | 424, 625 |
| BisI | GCNGC | 7 cut(s) | 27, 128, 324, 453, 519, 579, 582 |
| BlpI | GCTNAGC | 1 cut(s) | 594 |
| BlsI | GCNGC | 7 cut(s) | 28, 129, 325, 454, 520, 580, 583 |
| Bme1390I | CCNGG | 1 cut(s) | 967 |
| BmiI | GGNNCC | 2 cut(s) | 384, 489 |
| BmrFI | CCNGG | 1 cut(s) | 967 |
| BmsI | GCATC | 3 cut(s) | 541, 927, 1202 |
| BpiI | GAAGAC | 1 cut(s) | 780 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 733, 765, 1163, 1195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 594 |
| BpuEI | CTTGAG | 1 cut(s) | 327 |
| BsaBI | GATNNNNATC | 2 cut(s) | 381, 486 |
| BsaJI | CCNNGG | 3 cut(s) | 881, 965, 1200 |
| BsaWI | WCCGGW | 1 cut(s) | 65 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 392 |
| Bse118I | RCCGGY | 1 cut(s) | 1249 |
| Bse1I | ACTGG | 4 cut(s) | 505, 926, 1000, 1277 |
| Bse3DI | GCAATG | 1 cut(s) | 373 |
| Bse8I | GATNNNNATC | 2 cut(s) | 381, 486 |
| BseBI | CCWGG | 1 cut(s) | 967 |
| BseDI | CCNNGG | 3 cut(s) | 881, 965, 1200 |
| BseGI | GGATG | 3 cut(s) | 688, 1196, 1212 |
| BseJI | GATNNNNATC | 2 cut(s) | 381, 486 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BseMI | GCAATG | 1 cut(s) | 373 |
| BseMII | CTCAG | 3 cut(s) | 513, 608, 764 |
| BseNI | ACTGG | 4 cut(s) | 505, 926, 1000, 1277 |
| BseRI | GAGGAG | 5 cut(s) | 128, 408, 554, 557, 1157 |
| BseXI | GCAGC | 6 cut(s) | 38, 114, 464, 530, 590, 593 |
| Bsh1236I | CGCG | 1 cut(s) | 907 |
| BshFI | GGCC | 3 cut(s) | 46, 674, 1249 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BsiSI | CCGG | 2 cut(s) | 66, 1250 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BsmAI | GTCTC | 2 cut(s) | 94, 1105 |
| BsmBI | CGTCTC | 2 cut(s) | 94, 1105 |
| BsnI | GGCC | 3 cut(s) | 46, 674, 1249 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 594 |
| BspACI | CCGC | 3 cut(s) | 323, 479, 896 |
| BspANI | GGCC | 3 cut(s) | 46, 674, 1249 |
| BspCNI | CTCAG | 3 cut(s) | 514, 607, 763 |
| BspFNI | CGCG | 1 cut(s) | 907 |
| BspLI | GGNNCC | 2 cut(s) | 384, 489 |
| BspMI | ACCTGC | 1 cut(s) | 1087 |
| BspPI | GGATC | 5 cut(s) | 377, 390, 482, 495, 1235 |
| BspQI | GCTCTTC | 1 cut(s) | 804 |
| BsrDI | GCAATG | 1 cut(s) | 373 |
| BsrFI | RCCGGY | 1 cut(s) | 1249 |
| BsrI | ACTGG | 4 cut(s) | 505, 926, 1000, 1277 |
| BssAI | RCCGGY | 1 cut(s) | 1249 |
| BssECI | CCNNGG | 3 cut(s) | 881, 965, 1200 |
| BssMI | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| BssT1I | CCWWGG | 2 cut(s) | 881, 1200 |
| Bst2UI | CCWGG | 1 cut(s) | 967 |
| Bst4CI | ACNGT | 3 cut(s) | 51, 857, 892 |
| Bst6I | CTCTTC | 3 cut(s) | 636, 804, 1134 |
| BstC8I | GCNNGC | 4 cut(s) | 24, 312, 721, 1251 |
| BstDEI | CTNAG | 3 cut(s) | 522, 594, 750 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 390 |
| BstF5I | GGATG | 3 cut(s) | 688, 1196, 1212 |
| BstFNI | CGCG | 1 cut(s) | 907 |
| BstH2I | RGCGCY | 1 cut(s) | 726 |
| BstHHI | GCGC | 3 cut(s) | 132, 725, 907 |
| BstKTI | GATC | 7 cut(s) | 379, 385, 427, 490, 628, 1098, 1230 |
| BstMAI | GTCTC | 2 cut(s) | 94, 1105 |
| BstMBI | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 320, 329, 449, 590, 604, 902, 913, 1246 |
| BstNI | CCWGG | 1 cut(s) | 967 |
| BstSCI | CCNGG | 1 cut(s) | 965 |
| BstSFI | CTRYAG | 1 cut(s) | 203 |
| BstUI | CGCG | 1 cut(s) | 907 |
| BstV1I | GCAGC | 6 cut(s) | 38, 114, 464, 530, 590, 593 |
| BstV2I | GAAGAC | 1 cut(s) | 780 |
| BstX2I | RGATCY | 4 cut(s) | 382, 424, 487, 625 |
| BstYI | RGATCY | 4 cut(s) | 382, 424, 487, 625 |
| BsuRI | GGCC | 3 cut(s) | 46, 674, 1249 |
| BtsCI | GGATG | 3 cut(s) | 688, 1196, 1212 |
| BtsIMutI | CAGTG | 2 cut(s) | 862, 933 |
| BveI | ACCTGC | 1 cut(s) | 1087 |
| Cac8I | GCNNGC | 4 cut(s) | 24, 312, 721, 1251 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1121 |
| CfoI | GCGC | 3 cut(s) | 132, 725, 907 |
| Cfr10I | RCCGGY | 1 cut(s) | 1249 |
| Csp6I | GTAC | 1 cut(s) | 227 |
| CviAII | CATG | 3 cut(s) | 18, 169, 670 |
| CviQI | GTAC | 1 cut(s) | 227 |
| DdeI | CTNAG | 3 cut(s) | 522, 594, 750 |
| DpnI | GATC | 7 cut(s) | 378, 384, 426, 489, 627, 1097, 1229 |
| DpnII | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| EaeI | YGGCCR | 1 cut(s) | 672 |
| Eam1104I | CTCTTC | 3 cut(s) | 636, 804, 1134 |
| EarI | CTCTTC | 3 cut(s) | 636, 804, 1134 |
| Ecl136II | GAGCTC | 1 cut(s) | 356 |
| Eco130I | CCWWGG | 2 cut(s) | 881, 1200 |
| Eco24I | GRGCYC | 1 cut(s) | 358 |
| Eco32I | GATATC | 1 cut(s) | 972 |
| Eco47III | AGCGCT | 1 cut(s) | 724 |
| Eco53kI | GAGCTC | 1 cut(s) | 356 |
| Eco57I | CTGAAG | 5 cut(s) | 320, 408, 449, 513, 582 |
| EcoICRI | GAGCTC | 1 cut(s) | 356 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 390 |
| EcoRII | CCWGG | 1 cut(s) | 965 |
| EcoRV | GATATC | 1 cut(s) | 972 |
| EcoT14I | CCWWGG | 2 cut(s) | 881, 1200 |
| EcoT38I | GRGCYC | 1 cut(s) | 358 |
| ErhI | CCWWGG | 2 cut(s) | 881, 1200 |
| Esp3I | CGTCTC | 2 cut(s) | 94, 1105 |
| FaeI | CATG | 3 cut(s) | 21, 172, 673 |
| FatI | CATG | 3 cut(s) | 17, 168, 669 |
| FauNDI | CATATG | 1 cut(s) | 1216 |
| FbaI | TGATCA | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 7 cut(s) | 27, 128, 324, 453, 519, 579, 582 |
| FokI | GGATG | 3 cut(s) | 695, 1183, 1219 |
| FriOI | GRGCYC | 1 cut(s) | 358 |
| Fsp4HI | GCNGC | 7 cut(s) | 27, 128, 324, 453, 519, 579, 582 |
| FspBI | CTAG | 2 cut(s) | 1038, 1133 |
| GlaI | GCGC | 3 cut(s) | 131, 724, 906 |
| GluI | GCNGC | 7 cut(s) | 27, 128, 324, 453, 519, 579, 582 |
| HaeII | RGCGCY | 1 cut(s) | 726 |
| HaeIII | GGCC | 3 cut(s) | 46, 674, 1249 |
| HapII | CCGG | 2 cut(s) | 66, 1250 |
| HhaI | GCGC | 3 cut(s) | 132, 725, 907 |
| Hin1II | CATG | 3 cut(s) | 21, 172, 673 |
| Hin6I | GCGC | 3 cut(s) | 130, 723, 905 |
| HinP1I | GCGC | 3 cut(s) | 130, 723, 905 |
| HindIII | AAGCTT | 2 cut(s) | 145, 312 |
| HinfI | GANTC | 4 cut(s) | 185, 754, 872, 957 |
| HpaII | CCGG | 2 cut(s) | 66, 1250 |
| HphI | GGTGA | 2 cut(s) | 867, 1003 |
| Hpy188I | TCNGA | 5 cut(s) | 429, 616, 753, 772, 1227 |
| Hpy188III | TCNNGA | 8 cut(s) | 344, 359, 380, 386, 491, 1133, 1182, 1231 |
| HpyAV | CCTTC | 9 cut(s) | 29, 383, 424, 488, 688, 841, 951, 1179, 1239 |
| HpyCH4III | ACNGT | 3 cut(s) | 51, 857, 892 |
| HpyCH4V | TGCA | 6 cut(s) | 224, 274, 310, 607, 719, 1082 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 320, 329, 449, 590, 604, 902, 913, 1246 |
| HpyF3I | CTNAG | 3 cut(s) | 522, 594, 750 |
| Hsp92II | CATG | 3 cut(s) | 21, 172, 673 |
| HspAI | GCGC | 3 cut(s) | 130, 723, 905 |
| KroI | GCCGGC | 1 cut(s) | 1249 |
| KroNI | GCCGGC | 1 cut(s) | 1251 |
| Ksp22I | TGATCA | 1 cut(s) | 376 |
| Kzo9I | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| LguI | GCTCTTC | 1 cut(s) | 804 |
| LmnI | GCTCC | 1 cut(s) | 395 |
| Lsp1109I | GCAGC | 6 cut(s) | 38, 114, 464, 530, 590, 593 |
| LweI | GCATC | 3 cut(s) | 541, 927, 1202 |
| MaeI | CTAG | 2 cut(s) | 1038, 1133 |
| MaeIII | GTNAC | 3 cut(s) | 873, 928, 991 |
| MalI | GATC | 7 cut(s) | 378, 384, 426, 489, 627, 1097, 1229 |
| MboI | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| MflI | RGATCY | 4 cut(s) | 382, 424, 487, 625 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MluCI | AATT | 6 cut(s) | 252, 610, 620, 766, 791, 1021 |
| MlyI | GAGTC | 1 cut(s) | 881 |
| MmeI | TCCRAC | 1 cut(s) | 782 |
| MroNI | GCCGGC | 1 cut(s) | 1249 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1022 |
| MseI | TTAA | 5 cut(s) | 251, 255, 816, 1128, 1288 |
| MspA1I | CMGCKG | 2 cut(s) | 455, 521 |
| MspI | CCGG | 2 cut(s) | 66, 1250 |
| MspR9I | CCNGG | 1 cut(s) | 967 |
| MvaI | CCWGG | 1 cut(s) | 967 |
| MvnI | CGCG | 1 cut(s) | 907 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 320, 329, 449, 590, 604, 902, 913, 1246 |
| NaeI | GCCGGC | 1 cut(s) | 1251 |
| NdeI | CATATG | 1 cut(s) | 1216 |
| NdeII | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| NgoMIV | GCCGGC | 1 cut(s) | 1249 |
| NlaIII | CATG | 3 cut(s) | 21, 172, 673 |
| NlaIV | GGNNCC | 2 cut(s) | 384, 489 |
| NmuCI | GTSAC | 3 cut(s) | 873, 928, 991 |
| PacI | TTAATTAA | 1 cut(s) | 255 |
| PciSI | GCTCTTC | 1 cut(s) | 804 |
| PdiI | GCCGGC | 1 cut(s) | 1251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1022 |
| PfeI | GAWTC | 3 cut(s) | 185, 754, 957 |
| PkrI | GCNGC | 7 cut(s) | 28, 129, 325, 454, 520, 580, 583 |
| PleI | GAGTC | 1 cut(s) | 880 |
| PpsI | GAGTC | 1 cut(s) | 880 |
| PshBI | ATTAAT | 1 cut(s) | 1128 |
| Psp124BI | GAGCTC | 1 cut(s) | 358 |
| Psp6I | CCWGG | 1 cut(s) | 965 |
| PspGI | CCWGG | 1 cut(s) | 965 |
| PspN4I | GGNNCC | 2 cut(s) | 384, 489 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1121 |
| PsuI | RGATCY | 4 cut(s) | 382, 424, 487, 625 |
| PvuII | CAGCTG | 2 cut(s) | 455, 521 |
| RsaI | GTAC | 1 cut(s) | 228 |
| RsaNI | GTAC | 1 cut(s) | 227 |
| SacI | GAGCTC | 1 cut(s) | 358 |
| SapI | GCTCTTC | 1 cut(s) | 804 |
| SaqAI | TTAA | 5 cut(s) | 251, 255, 816, 1128, 1288 |
| SatI | GCNGC | 7 cut(s) | 27, 128, 324, 453, 519, 579, 582 |
| Sau3AI | GATC | 7 cut(s) | 376, 382, 424, 487, 625, 1095, 1227 |
| SchI | GAGTC | 1 cut(s) | 881 |
| ScrFI | CCNGG | 1 cut(s) | 967 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SfaNI | GCATC | 3 cut(s) | 541, 927, 1202 |
| SfcI | CTRYAG | 1 cut(s) | 203 |
| SmlI | CTYRAG | 1 cut(s) | 342 |
| SmoI | CTYRAG | 1 cut(s) | 342 |
| Sse9I | AATT | 6 cut(s) | 252, 610, 620, 766, 791, 1021 |
| SsiI | CCGC | 3 cut(s) | 323, 479, 896 |
| SspMI | CTAG | 2 cut(s) | 1038, 1133 |
| SstI | GAGCTC | 1 cut(s) | 358 |
| StyD4I | CCNGG | 1 cut(s) | 965 |
| StyI | CCWWGG | 2 cut(s) | 881, 1200 |
| TaaI | ACNGT | 3 cut(s) | 51, 857, 892 |
| TasI | AATT | 6 cut(s) | 252, 610, 620, 766, 791, 1021 |
| TatI | WGTACW | 1 cut(s) | 226 |
| TauI | GCSGC | 1 cut(s) | 326 |
| TfiI | GAWTC | 3 cut(s) | 185, 754, 957 |
| Tru1I | TTAA | 5 cut(s) | 251, 255, 816, 1128, 1288 |
| Tru9I | TTAA | 5 cut(s) | 251, 255, 816, 1128, 1288 |
| TscAI | CASTG | 2 cut(s) | 862, 933 |
| TseFI | GTSAC | 3 cut(s) | 873, 928, 991 |
| TseI | GCWGC | 6 cut(s) | 26, 127, 452, 518, 578, 581 |
| Tsp45I | GTSAC | 3 cut(s) | 873, 928, 991 |
| TspRI | CASTG | 2 cut(s) | 862, 933 |
| VspI | ATTAAT | 1 cut(s) | 1128 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 390 |
| XapI | RAATTY | 3 cut(s) | 610, 766, 1021 |
| XbaI | TCTAGA | 1 cut(s) | 1132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1022 |
| XspI | CTAG | 2 cut(s) | 1038, 1133 |