FvH4_6g39110

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Forward (+)
30942490 .. 30949559
7070 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39110.t1

Sequence Viewer

Length: 3159 bp
ATGAAAATAACTACGAATTATGCCACTGACGCCGTTACCCCATCCACGCCGTCACCCCCATATCTGAGTCCCCCACCTCTGATTTTCGTTTCAAAAATCATTTCACTTTCCCTCAAAACTATCGAAACCGCTCCTCTCTCAATCTCGCTGAAAACCCTAATTCCCTGTGTCTCCGGCGAATCCATCATCCATCTCTCTCCGGCGAATCCGTCGTACTCCCCAGTAACTGTCGACACGAGGCTCATCTTCGGCTCGAGGGCGGCGTCGAGAACAATTCCTCCACAACACCAGAATTCGAAAAAAATCAGTTCATATGAAATGGATAAGCGAAAAATGAACGCAGTTAATGAAGAAGGAAAGAAGAGAAAGAGGATAGTTGATGAAGGAGCAAAGAAGAGAAAGAGGACAGTGGATGAAGAGGCTGATGGTGTACTGCTGTCCAAACTATTTCTGGGACAGGAAAAAAGAAGGAGAAAACAAGAGAAGAAAAATAAGATAGAGGAGCCAAAGAAGAAGAAGGCCTTGAAGAAGACATCTCAAATAGAGGAGGAGGAGGAAGAAGAAGAAGATGAGACAGAGAAGAAGAAATCAAATCAGTTCAGATCAACATGGCCTGAAGTGGACAGTTTTAGAGAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCCCGTTTGGTTTACTTTTTGAAGGATTTTATGAGCATGTCAACAAAAAGCACTTTGGGAAGTCGAACAAGCTCATTGAAACAATCACCGACACTTACAATGAAAAGCTTGATGCATTTGTGATCGGGGAAGGAAGATACAGAATCACAAGCAGAGATGTATCTAAGATTCTAGGACTTCCTAGAAAAGGTGGCTCCTTTGAGACAATGGAAGTGGAAGAGAATGCAGCAGAGACATTATTTGGGAAAAACAAAAGAGTCACAAAAAAGTGTGTGATGGACGCTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGATGAAGAAAGAAGAAAGAAGAGAAAAAATTTGGTTAGGCTGCTCATTTTAGAAATTTGCATAAAGTTTCTATTTGCAAATGGGGGAGGGAGTGTCTCAAATGAGCTGGTAAATGCAGTATGGGGGAACATACAGAGCTGTGGATGGGCTCAAGAGGTTAGAAGATTTTTGTCGGGTTGTTTAAGACAACGACTAAAATCAAAGGGTAAGGGGTTGAGCGGGTTGAACACAGGAGGCTGTGCACACTTAATTCTGTATTGGCTCTGTGAGAAGACAAACGCCATAAAGTCGATTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTACCCAAGAATGCTGAATTCAAAACATTGAAGAGAGCTAAAAAAAACATGGCCGATGAGGATGATAAAGAGAAGGAAGAGGCAACAGAGAAAGTTGCAAGCGCTCATAAAAAAGAGATGAGTGAGCCTCAGATTCCAACCCAAAATTCAGAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACGAAGGCTTACAGTGAGCAACCACCAGAGTCACCACCAAGGAGGACGGTTGCGGAAGAAGCGCGTTGGTCGCCGAAAACACCGGTGACAGAGATGCCTTCTTTTGATTTGGGAATCTCTCCCTGGATATCTTGGAATAGCCCATTGGTGACTGGAATAATAACCATACCAGAGAAGAATTTCAATACTCCCTCTAGCCCTCAAATCATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTCTCTCCACAGGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATTGAGATTGAGCTGACAGAGGAAAACTCTGGAAGGACAGCATCATCCTTGGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAGAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACGAGTATGGAGATGTAATTCATACTATTGGTGCTGATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCGAGAGCAATACGGGTTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGAGACTTCATATGGGAAGGCCCATTGTATGGTTCAGAGATTACAAAGCTTGATCTGCTGGAGGTTATAATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGCTGACGAAATTTCTCAGCAAGATTCTCAGTCTATCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAACCCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCGATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACGTCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGGAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGCGTGCCGCTGCACCGCAACGGCAGCGTCCCGCTGCGTATTAGAACAGAAATCTGTAGTTACATGTGCATAGTTACATGCATAGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

1053

Amino Acids

120.64

Weight (kDa)

8.57

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2357
Acc36I ACCTGC 1 cut(s) 1801
AccB1I GGYRCC 1 cut(s) 2399
AccB7I CCANNNNNTGG 3 cut(s) 2318, 2475, 2871
AccBSI CCGCTC 2 cut(s) 131, 1209
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 1621, 2174
AclI AACGTT 1 cut(s) 3008
AclWI GGATC 3 cut(s) 1949, 2234, 2247
AcoI YGGCCR 1 cut(s) 1386
AcsI RAATTY 7 cut(s) 292, 1018, 1044, 1352, 1480, 1735, 2418
AcuI CTGAAG 4 cut(s) 636, 2100, 2789, 3044
AcyI GRCGYC 2 cut(s) 30, 263
AfaI GTAC 3 cut(s) 215, 432, 2978
AfeI AGCGCT 1 cut(s) 1438
AfiI CCNNNNNNNGG 4 cut(s) 860, 2318, 2475, 2871
AflIII ACRYGT 1 cut(s) 3129
AgeI ACCGGT 1 cut(s) 1639
AjnI CCWGG 1 cut(s) 1679
AjuI GAANNNNNNNTTGG 4 cut(s) 1465, 1497, 1685, 1717
AloI GAACNNNNNNTCC 2 cut(s) 262, 294
Alw21I GWGCWC 2 cut(s) 969, 1234
Alw26I GTCTC 7 cut(s) 175, 566, 869, 899, 1090, 1819, 2286
Alw44I GTGCAC 1 cut(s) 1230
AlwI GGATC 3 cut(s) 1949, 2234, 2247
AlwNI CAGNNNCTG 2 cut(s) 227, 1835
Ama87I CYCGRG 1 cut(s) 253
Aor51HI AGCGCT 1 cut(s) 1438
AoxI GGCC 7 cut(s) 519, 611, 673, 1386, 1961, 2022, 2308
ApaLI GTGCAC 1 cut(s) 1230
ApeKI GCWGC 6 cut(s) 899, 979, 1030, 3076, 3090, 3100
ApoI RAATTY 7 cut(s) 292, 1018, 1044, 1352, 1480, 1735, 2418
AseI ATTAAT 1 cut(s) 1842
AsiGI ACCGGT 1 cut(s) 1639
Asp700I GAANNNNTTC 2 cut(s) 1736, 2493
AspA2I CCTAGG 1 cut(s) 2453
AspLEI GCGC 2 cut(s) 1439, 1621
AspS9I GGNCC 5 cut(s) 674, 973, 1324, 2309, 2924
AsuHPI GGTGA 7 cut(s) 45, 751, 1581, 1654, 1717, 2588, 3073
AsuII TTCGAA 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 3 cut(s) 973, 1324, 2924
AvrII CCTAGG 1 cut(s) 2453
BaeGI GKGCMC 1 cut(s) 1234
BamHI GGATCC 1 cut(s) 2239
BanI GGYRCC 1 cut(s) 2399
BanII GRGCYC 2 cut(s) 969, 1141
BauI CACGAG 1 cut(s) 235
BbsI GAAGAC 4 cut(s) 536, 1268, 1494, 2605
Bbv12I GWGCWC 2 cut(s) 969, 1234
BbvCI CCTCAGC 1 cut(s) 2934
BbvI GCAGC 6 cut(s) 911, 991, 1017, 3063, 3087, 3102
BccI CCATC 8 cut(s) 49, 191, 198, 419, 943, 1128, 1774, 2666
BceAI ACGGC 3 cut(s) 17, 34, 3103
BciT130I CCWGG 1 cut(s) 1681
BcoDI GTCTC 7 cut(s) 175, 566, 869, 899, 1090, 1819, 2286
BfaI CTAG 6 cut(s) 845, 855, 1752, 1847, 2454, 2645
BfmI CTRYAG 2 cut(s) 2739, 3121
BfoI RGCGCY 1 cut(s) 1440
BfuAI ACCTGC 1 cut(s) 1801
BisI GCNGC 8 cut(s) 261, 900, 980, 1031, 3074, 3077, 3091, 3101
BlnI CCTAGG 1 cut(s) 2453
BlsI GCNGC 8 cut(s) 262, 901, 981, 1032, 3075, 3078, 3092, 3102
Bme1390I CCNGG 1 cut(s) 1681
Bme18I GGWCC 3 cut(s) 973, 1324, 2924
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 5 cut(s) 674, 973, 1324, 2309, 2924
BmiI GGNNCC 7 cut(s) 504, 868, 1325, 2142, 2241, 2401, 2779
BmrFI CCNGG 1 cut(s) 1681
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 4 cut(s) 775, 1641, 1916, 2689
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 4 cut(s) 536, 1268, 1494, 2605
BplI GAGNNNNNCTC 4 cut(s) 1447, 1479, 1877, 1909
BpmI CTGGAG 2 cut(s) 2078, 2369
Bpu10I CCTNAGC 1 cut(s) 2934
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 2 cut(s) 953, 1125
BsaHI GRCGYC 2 cut(s) 30, 263
BsaJI CCNNGG 5 cut(s) 1595, 1679, 1914, 2453, 2997
BsaWI WCCGGW 1 cut(s) 1639
BsaXI ACNNNNNCTCC 6 cut(s) 262, 292, 1068, 1098, 2993, 3023
Bsc4I CCNNNNNNNGG 4 cut(s) 860, 2318, 2475, 2871
Bse118I RCCGGY 2 cut(s) 1639, 1963
Bse1I ACTGG 3 cut(s) 221, 1714, 1991
Bse3DI GCAATG 1 cut(s) 2386
BseBI CCWGG 1 cut(s) 1681
BseDI CCNNGG 5 cut(s) 1595, 1679, 1914, 2453, 2997
BseLI CCNNNNNNNGG 4 cut(s) 860, 2318, 2475, 2871
BseMI GCAATG 1 cut(s) 2386
BseMII CTCAG 7 cut(s) 56, 656, 1478, 2210, 2438, 2450, 2948
BseNI ACTGG 3 cut(s) 221, 1714, 1991
BseRI GAGGAG 6 cut(s) 123, 515, 560, 563, 566, 1871
BseSI GKGCMC 1 cut(s) 1234
BseXI GCAGC 6 cut(s) 911, 991, 1017, 3063, 3087, 3102
BseYI CCCAGC 1 cut(s) 2271
BsgI GTGCAG 1 cut(s) 3062
Bsh1236I CGCG 2 cut(s) 1621, 2174
BshFI GGCC 7 cut(s) 521, 613, 675, 1388, 1963, 2024, 2310
BshNI GGYRCC 1 cut(s) 2399
BshTI ACCGGT 1 cut(s) 1639
BsiHKAI GWGCWC 2 cut(s) 969, 1234
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 4 cut(s) 174, 200, 1640, 1964
BslFI GGGAC 6 cut(s) 54, 468, 1337, 2697, 2928, 3080
BslI CCNNNNNNNGG 4 cut(s) 860, 2318, 2475, 2871
BsmAI GTCTC 7 cut(s) 175, 566, 869, 899, 1090, 1819, 2286
BsmBI CGTCTC 1 cut(s) 1819
BsmFI GGGAC 6 cut(s) 54, 468, 1337, 2697, 2928, 3080
BsmI GAATGC 3 cut(s) 901, 1351, 2225
BsnI GGCC 7 cut(s) 521, 613, 675, 1388, 1963, 2024, 2310
BsoBI CYCGRG 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 969, 1141, 1234
Bsp143I GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
BspANI GGCC 7 cut(s) 521, 613, 675, 1388, 1963, 2024, 2310
BspCNI CTCAG 7 cut(s) 57, 657, 1477, 2209, 2437, 2449, 2947
BspFNI CGCG 2 cut(s) 1621, 2174
BspLI GGNNCC 7 cut(s) 504, 868, 1325, 2142, 2241, 2401, 2779
BspMAI CTGCAG 1 cut(s) 2743
BspMI ACCTGC 1 cut(s) 1801
BspPI GGATC 3 cut(s) 1949, 2234, 2247
BspQI GCTCTTC 2 cut(s) 1518, 3059
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 2399
BsrBI CCGCTC 2 cut(s) 131, 1209
BsrDI GCAATG 1 cut(s) 2386
BsrFI RCCGGY 2 cut(s) 1639, 1963
BsrI ACTGG 3 cut(s) 221, 1714, 1991
BssAI RCCGGY 2 cut(s) 1639, 1963
BssECI CCNNGG 5 cut(s) 1595, 1679, 1914, 2453, 2997
BssMI GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
BssNI GRCGYC 2 cut(s) 30, 263
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 4 cut(s) 1595, 1914, 2453, 2997
Bst2BI CACGAG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 1681
Bst4CI ACNGT 5 cut(s) 229, 409, 626, 1571, 1606
BstACI GRCGYC 2 cut(s) 30, 263
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 4 cut(s) 1435, 1965, 2377, 3071
BstENI CCTNNNNNAGG 1 cut(s) 858
BstFNI CGCG 2 cut(s) 1621, 2174
BstH2I RGCGCY 1 cut(s) 1440
BstHHI GCGC 2 cut(s) 1439, 1621
BstKTI GATC 8 cut(s) 605, 798, 1812, 1944, 2242, 2344, 2666, 2907
BstMAI GTCTC 7 cut(s) 175, 566, 869, 899, 1090, 1819, 2286
BstMBI GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
BstMWI GCNNNNNNNGC 8 cut(s) 29, 1616, 1627, 1960, 2277, 2344, 2408, 3090
BstNI CCWGG 1 cut(s) 1681
BstNSI RCATGY 6 cut(s) 713, 2379, 2512, 2767, 3133, 3147
BstSCI CCNGG 1 cut(s) 1679
BstSFI CTRYAG 2 cut(s) 2739, 3121
BstSLI GKGCMC 1 cut(s) 1234
BstUI CGCG 2 cut(s) 1621, 2174
BstV1I GCAGC 6 cut(s) 911, 991, 1017, 3063, 3087, 3102
BstV2I GAAGAC 4 cut(s) 536, 1268, 1494, 2605
BstX2I RGATCY 1 cut(s) 2239
BstXI CCANNNNNNTGG 2 cut(s) 2710, 2953
BstYI RGATCY 1 cut(s) 2239
BsuRI GGCC 7 cut(s) 521, 613, 675, 1388, 1963, 2024, 2310
BtsI GCAGTG 1 cut(s) 2376
BtsIMutI CAGTG 6 cut(s) 24, 414, 653, 1576, 2376, 3020
BveI ACCTGC 1 cut(s) 1801
Cac8I GCNNGC 4 cut(s) 1435, 1965, 2377, 3071
CaiI CAGNNNCTG 2 cut(s) 227, 1835
CfoI GCGC 2 cut(s) 1439, 1621
Cfr10I RCCGGY 2 cut(s) 1639, 1963
Cfr13I GGNCC 5 cut(s) 674, 973, 1324, 2309, 2924
CseI GACGC 4 cut(s) 38, 252, 962, 3082
Csp6I GTAC 3 cut(s) 214, 431, 2977
CspAI ACCGGT 1 cut(s) 1639
CspCI CAANNNNNGTGG 2 cut(s) 867, 902
CviQI GTAC 3 cut(s) 214, 431, 2977
DpnI GATC 8 cut(s) 604, 797, 1811, 1943, 2241, 2343, 2665, 2906
DpnII GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
EaeI YGGCCR 1 cut(s) 1386
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 4 cut(s) 1595, 1914, 2453, 2997
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 969, 1141
Eco32I GATATC 1 cut(s) 1686
Eco47I GGWCC 3 cut(s) 973, 1324, 2924
Eco47III AGCGCT 1 cut(s) 1438
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 4 cut(s) 636, 2100, 2789, 3044
Eco88I CYCGRG 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 967
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 1324
EcoRI GAATTC 2 cut(s) 292, 1352
EcoRII CCWGG 1 cut(s) 1679
EcoRV GATATC 1 cut(s) 1686
EcoT14I CCWWGG 4 cut(s) 1595, 1914, 2453, 2997
EcoT22I ATGCAT 2 cut(s) 790, 3149
EcoT38I GRGCYC 2 cut(s) 969, 1141
ErhI CCWWGG 4 cut(s) 1595, 1914, 2453, 2997
Esp3I CGTCTC 1 cut(s) 1819
FalI AAGNNNNNCTT 4 cut(s) 506, 538, 2826, 2858
FaqI GGGAC 6 cut(s) 54, 468, 1337, 2697, 2928, 3080
FauI CCCGC 3 cut(s) 1202, 2789, 3105
FauNDI CATATG 3 cut(s) 313, 1930, 2300
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 8 cut(s) 261, 900, 980, 1031, 3074, 3077, 3091, 3101
FriOI GRGCYC 2 cut(s) 969, 1141
Fsp4HI GCNGC 8 cut(s) 261, 900, 980, 1031, 3074, 3077, 3091, 3101
FspBI CTAG 6 cut(s) 845, 855, 1752, 1847, 2454, 2645
GlaI GCGC 2 cut(s) 1438, 1620
GluI GCNGC 8 cut(s) 261, 900, 980, 1031, 3074, 3077, 3091, 3101
GsaI CCCAGC 1 cut(s) 2275
GsuI CTGGAG 2 cut(s) 2078, 2369
HaeII RGCGCY 1 cut(s) 1440
HaeIII GGCC 7 cut(s) 521, 613, 675, 1388, 1963, 2024, 2310
HapII CCGG 4 cut(s) 174, 200, 1640, 1964
HgaI GACGC 4 cut(s) 38, 252, 962, 3082
HhaI GCGC 2 cut(s) 1439, 1621
Hin1I GRCGYC 2 cut(s) 30, 263
Hin6I GCGC 2 cut(s) 1437, 1619
HinP1I GCGC 2 cut(s) 1437, 1619
HincII GTYRAC 2 cut(s) 232, 715
HindII GTYRAC 2 cut(s) 232, 715
HindIII AAGCTT 6 cut(s) 779, 2278, 2336, 2819, 2840, 3044
HpaII CCGG 4 cut(s) 174, 200, 1640, 1964
HphI GGTGA 7 cut(s) 45, 751, 1581, 1654, 1717, 2588, 3073
Hpy166II GTNNAC 6 cut(s) 232, 431, 622, 686, 715, 1232
Hpy188I TCNGA 9 cut(s) 66, 81, 602, 1467, 1486, 1941, 2199, 2326, 2815
Hpy188III TCNNGA 8 cut(s) 267, 1142, 1847, 1896, 1945, 2057, 2878, 2902
Hpy8I GTNNAC 6 cut(s) 232, 431, 622, 686, 715, 1232
Hpy99I CGWCG 3 cut(s) 214, 268, 2560
HpyCH4III ACNGT 5 cut(s) 229, 409, 626, 1571, 1606
HpyCH4IV ACGT 2 cut(s) 2941, 3008
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 1616, 1627, 1960, 2277, 2344, 2408, 3090
HpySE526I ACGT 2 cut(s) 2941, 3008
Hsp92I GRCGYC 2 cut(s) 30, 263
HspAI GCGC 2 cut(s) 1437, 1619
KroI GCCGGC 1 cut(s) 1963
KroNI GCCGGC 1 cut(s) 1965
Kzo9I GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
LguI GCTCTTC 2 cut(s) 1518, 3059
LmnI GCTCC 7 cut(s) 136, 386, 502, 872, 2059, 2783, 2805
Lsp1109I GCAGC 6 cut(s) 911, 991, 1017, 3063, 3087, 3102
LweI GCATC 4 cut(s) 775, 1641, 1916, 2689
MaeI CTAG 6 cut(s) 845, 855, 1752, 1847, 2454, 2645
MaeII ACGT 2 cut(s) 2941, 3008
MalI GATC 8 cut(s) 604, 797, 1811, 1943, 2241, 2343, 2665, 2906
MbiI CCGCTC 2 cut(s) 131, 1209
MboI GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
MflI RGATCY 1 cut(s) 2239
MhlI GDGCHC 3 cut(s) 969, 1141, 1234
MlyI GAGTC 4 cut(s) 76, 939, 1595, 2188
MmeI TCCRAC 1 cut(s) 1496
Mph1103I ATGCAT 2 cut(s) 790, 3149
MroNI GCCGGC 1 cut(s) 1963
MroXI GAANNNNTTC 2 cut(s) 1736, 2493
MseI TTAA 7 cut(s) 345, 959, 1172, 1238, 1530, 1842, 2001
MslI CAYNNNNRTG 2 cut(s) 2230, 2496
MspA1I CMGCKG 2 cut(s) 3076, 3100
MspI CCGG 4 cut(s) 174, 200, 1640, 1964
MspR9I CCNGG 1 cut(s) 1681
Mva1269I GAATGC 3 cut(s) 901, 1351, 2225
MvaI CCWGG 1 cut(s) 1681
MvnI CGCG 2 cut(s) 1621, 2174
MwoI GCNNNNNNNGC 8 cut(s) 29, 1616, 1627, 1960, 2277, 2344, 2408, 3090
NaeI GCCGGC 1 cut(s) 1965
NdeI CATATG 3 cut(s) 313, 1930, 2300
NdeII GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
NgoMIV GCCGGC 1 cut(s) 1963
NlaIV GGNNCC 7 cut(s) 504, 868, 1325, 2142, 2241, 2401, 2779
NmuCI GTSAC 5 cut(s) 51, 931, 1587, 1642, 1705
NsiI ATGCAT 2 cut(s) 790, 3149
NspI RCATGY 6 cut(s) 713, 2379, 2512, 2767, 3133, 3147
NspV TTCGAA 1 cut(s) 296
PaeI GCATGC 1 cut(s) 2379
PaeR7I CTCGAG 1 cut(s) 253
PceI AGGCCT 1 cut(s) 521
PciI ACATGT 1 cut(s) 3129
PciSI GCTCTTC 2 cut(s) 1518, 3059
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PctI GAATGC 3 cut(s) 901, 1351, 2225
PdiI GCCGGC 1 cut(s) 1965
PdmI GAANNNNTTC 2 cut(s) 1736, 2493
PfeI GAWTC 8 cut(s) 179, 205, 816, 841, 1468, 1671, 2432, 2648
PflMI CCANNNNNTGG 3 cut(s) 2318, 2475, 2871
PinAI ACCGGT 1 cut(s) 1639
PkrI GCNGC 8 cut(s) 262, 901, 981, 1032, 3075, 3078, 3092, 3102
PleI GAGTC 4 cut(s) 75, 938, 1594, 2188
PpsI GAGTC 4 cut(s) 75, 938, 1594, 2188
PpuMI RGGWCCY 1 cut(s) 1324
PscI ACATGT 1 cut(s) 3129
PshBI ATTAAT 1 cut(s) 1842
PsiI TTATAA 1 cut(s) 2357
Psp124BI GAGCTC 1 cut(s) 969
Psp1406I AACGTT 1 cut(s) 3008
Psp5II RGGWCCY 1 cut(s) 1324
Psp6I CCWGG 1 cut(s) 1679
PspFI CCCAGC 1 cut(s) 2271
PspGI CCWGG 1 cut(s) 1679
PspN4I GGNNCC 7 cut(s) 504, 868, 1325, 2142, 2241, 2401, 2779
PspPI GGNCC 5 cut(s) 674, 973, 1324, 2309, 2924
PspPPI RGGWCCY 1 cut(s) 1324
PspXI VCTCGAGB 1 cut(s) 253
PstI CTGCAG 1 cut(s) 2743
PstNI CAGNNNCTG 2 cut(s) 227, 1835
PsuI RGATCY 1 cut(s) 2239
RsaI GTAC 3 cut(s) 215, 432, 2978
RsaNI GTAC 3 cut(s) 214, 431, 2977
RseI CAYNNNNRTG 2 cut(s) 2230, 2496
SacI GAGCTC 1 cut(s) 969
SalI GTCGAC 1 cut(s) 230
SapI GCTCTTC 2 cut(s) 1518, 3059
SaqAI TTAA 7 cut(s) 345, 959, 1172, 1238, 1530, 1842, 2001
SatI GCNGC 8 cut(s) 261, 900, 980, 1031, 3074, 3077, 3091, 3101
Sau3AI GATC 8 cut(s) 602, 795, 1809, 1941, 2239, 2341, 2663, 2904
Sau96I GGNCC 5 cut(s) 674, 973, 1324, 2309, 2924
SchI GAGTC 4 cut(s) 76, 939, 1595, 2188
ScrFI CCNGG 1 cut(s) 1681
SduI GDGCHC 3 cut(s) 969, 1141, 1234
SfaNI GCATC 4 cut(s) 775, 1641, 1916, 2689
SfcI CTRYAG 2 cut(s) 2739, 3121
Sfr274I CTCGAG 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 296
SgrAI CRCCGGYG 1 cut(s) 1639
SinI GGWCC 3 cut(s) 973, 1324, 2924
SlaI CTCGAG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 2230, 2496
SmlI CTYRAG 3 cut(s) 253, 968, 1140
SmoI CTYRAG 3 cut(s) 253, 968, 1140
SphI GCATGC 1 cut(s) 2379
SseBI AGGCCT 1 cut(s) 521
SspMI CTAG 6 cut(s) 845, 855, 1752, 1847, 2454, 2645
SstI GAGCTC 1 cut(s) 969
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 1679
StyI CCWWGG 4 cut(s) 1595, 1914, 2453, 2997
TaaI ACNGT 5 cut(s) 229, 409, 626, 1571, 1606
TaiI ACGT 2 cut(s) 2944, 3011
TaqI TCGA 7 cut(s) 123, 231, 254, 266, 296, 737, 1280
TatI WGTACW 2 cut(s) 430, 2976
TauI GCSGC 2 cut(s) 263, 3076
TfiI GAWTC 8 cut(s) 179, 205, 816, 841, 1468, 1671, 2432, 2648
Tru1I TTAA 7 cut(s) 345, 959, 1172, 1238, 1530, 1842, 2001
Tru9I TTAA 7 cut(s) 345, 959, 1172, 1238, 1530, 1842, 2001
TscAI CASTG 6 cut(s) 31, 414, 660, 1576, 2376, 3027
TseFI GTSAC 5 cut(s) 51, 931, 1587, 1642, 1705
TseI GCWGC 6 cut(s) 899, 979, 1030, 3076, 3090, 3100
Tsp45I GTSAC 5 cut(s) 51, 931, 1587, 1642, 1705
TspGWI ACGGA 3 cut(s) 198, 2304, 2861
TspRI CASTG 6 cut(s) 31, 414, 660, 1576, 2376, 3027
Van91I CCANNNNNTGG 3 cut(s) 2318, 2475, 2871
VneI GTGCAC 1 cut(s) 1230
VpaK11BI GGWCC 3 cut(s) 973, 1324, 2924
VspI ATTAAT 1 cut(s) 1842
XagI CCTNNNNNAGG 1 cut(s) 858
XapI RAATTY 7 cut(s) 292, 1018, 1044, 1352, 1480, 1735, 2418
XbaI TCTAGA 1 cut(s) 1846
XceI RCATGY 6 cut(s) 713, 2379, 2512, 2767, 3133, 3147
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 2453
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 2 cut(s) 1736, 2493
XspI CTAG 6 cut(s) 845, 855, 1752, 1847, 2454, 2645
Zsp2I ATGCAT 2 cut(s) 790, 3149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.