Rh4BG396700

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
54808554 .. 54809316
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG396700.1

Sequence Viewer

Length: 423 bp
ATGATGGCCCACAGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCTACCAAAGACTCGGAGATGGCACAGAGGGAAGTGTTCGAGATGAGCGTCGCAGGATCTGGAGAGGTGGAGCCTTCGATCAGTCAGATCCTTGGAAAGATTGACAGGCTGAAGAATCAGGTTGGTAGCTCTCTTCCGCAAGATCGTCCCTCCACTCACCAAGTACTCGCCGGAGACCATTATGCTGATTGTGTTGAATCTGGTACGAATCTGGAGATGGTGAGGTCGAAATCGGCGACCACCGGAGAAAGTATTCCTTGCGATTTCTGCAATGAGCAGGCTGTGATGTTGTACTGTAAGGCCCACAAGCTTCGGAAGATATCTGAACTCTTCCTTTATACTCAGCGATCTTCGTTGATCTGA

Protein Analysis

140

Amino Acids

15.46

Weight (kDa)

6.07

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 197
AclWI GGATC 2 cut(s) 124, 142
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 3 cut(s) 225, 265, 353
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 2 cut(s) 189, 370
AluI AGCT 2 cut(s) 189, 370
Alw26I GTCTC 2 cut(s) 29, 228
AlwI GGATC 2 cut(s) 124, 142
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 2 cut(s) 6, 360
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 7, 361
AsuHPI GGTGA 2 cut(s) 209, 292
BccI CCATC 2 cut(s) 73, 271
BcoDI GTCTC 2 cut(s) 29, 228
BmcAI AGTACT 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 7, 361
BmiI GGNNCC 1 cut(s) 132
BpmI CTGGAG 2 cut(s) 141, 293
BpuEI CTTGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 29
BshFI GGCC 2 cut(s) 8, 362
BsiSI CCGG 2 cut(s) 231, 303
BslFI GGGAC 1 cut(s) 192
BsmAI GTCTC 2 cut(s) 29, 228
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 2 cut(s) 8, 362
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
BspACI CCGC 2 cut(s) 60, 197
BspANI GGCC 2 cut(s) 8, 362
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 2 cut(s) 124, 142
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 198, 395
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 402
BstKTI GATC 7 cut(s) 54, 119, 141, 150, 205, 410, 420
BstMAI GTCTC 2 cut(s) 29, 228
BstMBI GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 116, 147
BstYI RGATCY 2 cut(s) 116, 147
BsuRI GGCC 2 cut(s) 8, 362
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 7, 361
CseI GACGC 1 cut(s) 97
Csp6I GTAC 3 cut(s) 224, 264, 352
CviJI RGCY 7 cut(s) 8, 133, 169, 189, 341, 362, 370
CviKI_1 RGCY 7 cut(s) 8, 133, 169, 189, 341, 362, 370
CviQI GTAC 3 cut(s) 224, 264, 352
DdeI CTNAG 1 cut(s) 402
DpnI GATC 7 cut(s) 53, 118, 140, 149, 204, 409, 419
DpnII GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
Eam1104I CTCTTC 2 cut(s) 198, 395
EarI CTCTTC 2 cut(s) 198, 395
Eco130I CCWWGG 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 191
EcoRV GATATC 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaiI YATR 2 cut(s) 243, 399
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 1 cut(s) 192
GsuI CTGGAG 2 cut(s) 141, 293
HaeIII GGCC 2 cut(s) 8, 362
HapII CCGG 2 cut(s) 231, 303
HgaI GACGC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 4 cut(s) 71, 175, 257, 268
HpaII CCGG 2 cut(s) 231, 303
HphI GGTGA 2 cut(s) 209, 292
Hpy188I TCNGA 5 cut(s) 76, 147, 375, 385, 422
Hpy188III TCNNGA 4 cut(s) 32, 100, 120, 272
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 1 cut(s) 402
Kzo9I GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 9 cut(s) 99, 105, 151, 164, 244, 246, 257, 316, 323
MalI GATC 7 cut(s) 53, 118, 140, 149, 204, 409, 419
MboI GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
MboII GAAGA 6 cut(s) 46, 184, 185, 382, 388, 402
MflI RGATCY 2 cut(s) 116, 147
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 6 cut(s) 50, 55, 81, 118, 220, 276
MroXI GAANNNNTTC 1 cut(s) 312
MspI CCGG 2 cut(s) 231, 303
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
NlaIV GGNNCC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 293
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 175, 257, 268
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 7, 361
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 116, 147
RsaI GTAC 3 cut(s) 225, 265, 353
RsaNI GTAC 3 cut(s) 224, 264, 352
Sau3AI GATC 7 cut(s) 51, 116, 138, 147, 202, 407, 417
Sau96I GGNCC 2 cut(s) 7, 361
ScaI AGTACT 1 cut(s) 225
SchI GAGTC 1 cut(s) 65
SetI ASST 5 cut(s) 129, 183, 191, 287, 372
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SsiI CCGC 2 cut(s) 60, 197
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 99, 137, 287
TatI WGTACW 2 cut(s) 223, 351
TfiI GAWTC 3 cut(s) 175, 257, 268
XmnI GAANNNNTTC 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.