RchiOBHm_Chr1g0327221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000274
Physical Location & Seq
Reverse (-)
15951684 .. 15952142
459 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55676

Sequence Viewer

Length: 342 bp
ATGCTGCAGCAAGGCAGCCGAATGAAATTTGACAAGAGTCAAAGCACTCACATAAAATTAAAGATGGTTGAAAGTATTTTGAGCGATGATGAGATAAGAACAATAAGGTGGATAAAGGAAAATTATGACGGTGGAAGGATCCCTTTGAACCATGCCAGAATCTGCCCCCAACAAGACGAAGGATCATTAGATTGCGGAGCTTTTGTAATGTATTACATGGACAGGATGGCAAAAGAGGAGAAGATGCCAAACAAAGTCACCAAAGCTCAGATCATGAAATTCAAAGCTCAAATATTCAAAAAATTTGCTGAACATAAGCAGAGCTGGAACTCAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.28

Weight (kDa)

9.42

Isoelectric Point (pI)

68.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AclWI GGATC 3 cut(s) 133, 146, 190
AcsI RAATTY 3 cut(s) 26, 278, 302
AgsI TTSAA 4 cut(s) 71, 148, 283, 298
AluBI AGCT 4 cut(s) 200, 266, 287, 324
AluI AGCT 4 cut(s) 200, 266, 287, 324
AlwI GGATC 3 cut(s) 133, 146, 190
AlwNI CAGNNNCTG 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 4, 7, 15
ApoI RAATTY 3 cut(s) 26, 278, 302
AsuHPI GGTGA 1 cut(s) 250
BamHI GGATCC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 19, 27
BccI CCATC 2 cut(s) 58, 220
BfmI CTRYAG 1 cut(s) 5
BisI GCNGC 3 cut(s) 5, 8, 16
BlsI GCNGC 3 cut(s) 6, 9, 17
BmiI GGNNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
BseGI GGATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 19, 27
Bsp143I GATC 3 cut(s) 138, 182, 270
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 9
BspPI GGATC 3 cut(s) 133, 146, 190
BssMI GATC 3 cut(s) 138, 182, 270
Bst4CI ACNGT 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 267, 331
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 3 cut(s) 141, 185, 273
BstMBI GATC 3 cut(s) 138, 182, 270
BstPAI GACNNNNGTC 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 19, 27
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 273
CviAII CATG 3 cut(s) 152, 217, 274
CviJI RGCY 5 cut(s) 18, 200, 266, 287, 324
CviKI_1 RGCY 5 cut(s) 18, 200, 266, 287, 324
DdeI CTNAG 2 cut(s) 267, 331
DpnI GATC 3 cut(s) 140, 184, 272
DpnII GATC 3 cut(s) 138, 182, 270
FaeI CATG 3 cut(s) 155, 220, 277
FaiI YATR 6 cut(s) 53, 126, 153, 218, 275, 315
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 3 cut(s) 151, 216, 273
Fnu4HI GCNGC 3 cut(s) 5, 8, 16
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 5, 8, 16
GluI GCNGC 3 cut(s) 5, 8, 16
Hin1II CATG 3 cut(s) 155, 220, 277
HinfI GANTC 2 cut(s) 37, 159
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 129, 173
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 2 cut(s) 267, 331
Hsp92II CATG 3 cut(s) 155, 220, 277
Kzo9I GATC 3 cut(s) 138, 182, 270
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 3 cut(s) 169, 208, 310
Lsp1109I GCAGC 2 cut(s) 19, 27
LweI GCATC 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 140, 184, 272
MboI GATC 3 cut(s) 138, 182, 270
MboII GAAGA 1 cut(s) 253
MflI RGATCY 1 cut(s) 138
MluCI AATT 6 cut(s) 26, 56, 121, 278, 302, 337
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 1 cut(s) 229
MseI TTAA 2 cut(s) 59, 340
NdeII GATC 3 cut(s) 138, 182, 270
NlaIII CATG 3 cut(s) 155, 220, 277
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 256
PagI TCATGA 1 cut(s) 273
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 6, 9, 17
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PshAI GACNNNNGTC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 140
PstI CTGCAG 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 138
SaqAI TTAA 2 cut(s) 59, 340
SatI GCNGC 3 cut(s) 5, 8, 16
Sau3AI GATC 3 cut(s) 138, 182, 270
SchI GAGTC 1 cut(s) 46
SetI ASST 5 cut(s) 110, 202, 268, 289, 326
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 5
SgeI CNNG 9 cut(s) 23, 46, 164, 168, 185, 229, 235, 286, 337
Sse9I AATT 6 cut(s) 26, 56, 121, 278, 302, 337
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 294
TaaI ACNGT 1 cut(s) 131
TasI AATT 6 cut(s) 26, 56, 121, 278, 302, 337
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 59, 340
Tru9I TTAA 2 cut(s) 59, 340
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 4, 7, 15
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 38, 290
XapI RAATTY 3 cut(s) 26, 278, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.