FvH4_6g36710

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Reverse (-)
28887751 .. 28888938
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36710.t1

Sequence Viewer

Length: 504 bp
ATGGAAGTGGAAGAGAATGCAGCAGAGACATTGTTTGGGAAAAACAAAACAGTGACAAAAAAGTGTGTGATGGACGCTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGATGAAGAAAGAAGAAAGAAGATAAAAAATTTGGTTAGGTTGCTTATTTTAGAAATTTGCATAAAGTTTCTATTTGCAAATGGGGGAGGGAGTGTCTCAAATGAGCTGGTAAATGCAGTATGGGGGAACATACAGAGCTGTGGATGGGCTCAAGAGTATTGGCTCTGTGAGAAGACAAACGCCATAAAGCCGGTTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTACCCAAGAATGCTGAATTCAAAACATTGAAGCAACTGTTCGCTGGAATCAAGTCTGATCCAGAAGAAACAGATTGCAGCAGAGGAAGGAGAAAGGCCACCGTCCTCTCTAATATCCGGTCAAAGCCAAAAAGCAAAGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

168

Amino Acids

18.99

Weight (kDa)

9.05

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 3 cut(s) 139, 165, 374
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 3 cut(s) 308, 379, 388
AluBI AGCT 4 cut(s) 88, 217, 249, 358
AluI AGCT 4 cut(s) 88, 217, 249, 358
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 20, 211
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 3 cut(s) 20, 100, 435
ApoI RAATTY 3 cut(s) 139, 165, 374
AspS9I GGNCC 2 cut(s) 94, 346
AvaII GGWCC 2 cut(s) 94, 346
BanII GRGCYC 2 cut(s) 90, 262
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 32, 112, 447
BccI CCATC 2 cut(s) 64, 249
BcoDI GTCTC 2 cut(s) 20, 211
BisI GCNGC 3 cut(s) 21, 101, 436
BlsI GCNGC 3 cut(s) 22, 102, 437
Bme18I GGWCC 2 cut(s) 94, 346
BmgT120I GGNCC 2 cut(s) 94, 346
BmiI GGNNCC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 74, 246
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 301
BseGI GGATG 2 cut(s) 260, 325
BseLI CCNNNNNNNGG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 32, 112, 447
BshFI GGCC 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 302, 475
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 20, 211
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 2 cut(s) 22, 373
BsnI GGCC 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 90, 262
Bsp143I GATC 1 cut(s) 415
BspANI GGCC 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssMI GATC 1 cut(s) 415
Bst4CI ACNGT 3 cut(s) 52, 396, 460
Bst6I CTCTTC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 260, 325
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 2 cut(s) 20, 211
BstMBI GATC 1 cut(s) 415
BstV1I GCAGC 3 cut(s) 32, 112, 447
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 455
BtsCI GGATG 2 cut(s) 260, 325
BtsIMutI CAGTG 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 94, 346
CseI GACGC 1 cut(s) 83
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 90, 262
Eco47I GGWCC 2 cut(s) 94, 346
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 374
EcoT38I GRGCYC 2 cut(s) 90, 262
FaiI YATR 5 cut(s) 173, 232, 242, 296, 330
FaqI GGGAC 1 cut(s) 359
Fnu4HI GCNGC 3 cut(s) 21, 101, 436
FokI GGATG 2 cut(s) 267, 332
FriOI GRGCYC 2 cut(s) 90, 262
Fsp4HI GCNGC 3 cut(s) 21, 101, 436
GluI GCNGC 3 cut(s) 21, 101, 436
HaeIII GGCC 1 cut(s) 455
HapII CCGG 2 cut(s) 302, 475
HgaI GACGC 1 cut(s) 83
HinfI GANTC 1 cut(s) 405
HpaII CCGG 2 cut(s) 302, 475
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 2 cut(s) 263, 419
HpyAV CCTTC 2 cut(s) 302, 438
HpyCH4III ACNGT 3 cut(s) 52, 396, 460
HpyCH4V TGCA 5 cut(s) 20, 171, 188, 227, 435
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 110, 203, 315, 387, 432, 488
Lsp1109I GCAGC 3 cut(s) 32, 112, 447
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 6 cut(s) 23, 128, 135, 142, 295, 434
MhlI GDGCHC 2 cut(s) 90, 262
MluCI AATT 3 cut(s) 139, 165, 374
MnlI CCTC 8 cut(s) 191, 310, 316, 330, 359, 434, 473, 491
MseI TTAA 1 cut(s) 80
MspI CCGG 2 cut(s) 302, 475
Mva1269I GAATGC 2 cut(s) 22, 373
NdeII GATC 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 52
PctI GAATGC 2 cut(s) 22, 373
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 3 cut(s) 22, 102, 437
PpuMI RGGWCCY 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 94, 346
PspPPI RGGWCCY 1 cut(s) 346
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 3 cut(s) 21, 101, 436
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 2 cut(s) 94, 346
SduI GDGCHC 2 cut(s) 90, 262
SetI ASST 7 cut(s) 90, 152, 219, 251, 351, 360, 502
SinI GGWCC 2 cut(s) 94, 346
SmlI CTYRAG 2 cut(s) 89, 261
SmoI CTYRAG 2 cut(s) 89, 261
Sse9I AATT 3 cut(s) 139, 165, 374
SstI GAGCTC 1 cut(s) 90
TaaI ACNGT 3 cut(s) 52, 396, 460
TasI AATT 3 cut(s) 139, 165, 374
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 3 cut(s) 20, 100, 435
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 94, 346
XapI RAATTY 3 cut(s) 139, 165, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.