FvH4_6g36740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Reverse (-)
28895131 .. 28896448
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36740.t1

Sequence Viewer

Length: 714 bp
ATGGGAAGGCCATTGTATGGTTCAGAGATTACAAAGCTTGATCTGCTGGAGGTTATAATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGCTGACGAAATTTCTCAGCAAGATTCTCAGTCTGTCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAACCCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCAATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACATCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGAAAACGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

27.51

Weight (kDa)

8.26

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 98
AccB7I CCANNNNNTGG 3 cut(s) 17, 174, 570
AciI CCGC 1 cut(s) 481
AclI AACGTT 1 cut(s) 707
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 3 cut(s) 17, 174, 570
AgsI TTSAA 3 cut(s) 323, 351, 593
AluBI AGCT 4 cut(s) 37, 110, 520, 541
AluI AGCT 4 cut(s) 37, 110, 520, 541
AoxI GGCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 192
AspA2I CCTAGG 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 623
AvrII CCTAGG 1 cut(s) 152
BanI GGYRCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 633
BccI CCATC 1 cut(s) 365
BfaI CTAG 2 cut(s) 153, 344
BfmI CTRYAG 1 cut(s) 438
BlnI CCTAGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 2 cut(s) 100, 478
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 152, 696
BsaXI ACNNNNNCTCC 1 cut(s) 692
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 174, 570
Bse3DI GCAATG 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 152, 696
BseGI GGATG 3 cut(s) 438, 597, 640
BseLI CCNNNNNNNGG 3 cut(s) 17, 174, 570
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 3 cut(s) 137, 149, 647
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 17, 174, 570
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 40, 362
BspACI CCGC 1 cut(s) 481
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 3 cut(s) 136, 148, 646
BspLI GGNNCC 2 cut(s) 100, 478
BspMAI CTGCAG 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 152, 696
BssMI GATC 2 cut(s) 40, 362
BssT1I CCWWGG 2 cut(s) 152, 696
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 123, 135, 633
BstF5I GGATG 3 cut(s) 438, 597, 640
BstKTI GATC 2 cut(s) 43, 365
BstMBI GATC 2 cut(s) 40, 362
BstMWI GCNNNNNNNGC 2 cut(s) 43, 107
BstNSI RCATGY 3 cut(s) 78, 211, 466
BstSFI CTRYAG 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 304
BstXI CCANNNNNNTGG 2 cut(s) 409, 652
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 3 cut(s) 438, 597, 640
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 623
Csp6I GTAC 1 cut(s) 676
CviAII CATG 7 cut(s) 75, 174, 197, 208, 390, 463, 496
CviJI RGCY 6 cut(s) 10, 37, 110, 477, 520, 541
CviKI_1 RGCY 6 cut(s) 10, 37, 110, 477, 520, 541
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 3 cut(s) 123, 135, 633
DpnI GATC 2 cut(s) 42, 364
DpnII GATC 2 cut(s) 40, 362
Eco130I CCWWGG 2 cut(s) 152, 696
Eco47I GGWCC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 488
EcoT14I CCWWGG 2 cut(s) 152, 696
ErhI CCWWGG 2 cut(s) 152, 696
FaeI CATG 7 cut(s) 78, 177, 200, 211, 393, 466, 499
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 1 cut(s) 396
FatI CATG 7 cut(s) 74, 173, 196, 207, 389, 462, 495
FauI CCCGC 1 cut(s) 488
FokI GGATG 3 cut(s) 445, 584, 627
FspBI CTAG 2 cut(s) 153, 344
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 7 cut(s) 78, 177, 200, 211, 393, 466, 499
HindIII AAGCTT 3 cut(s) 35, 518, 539
HinfI GANTC 2 cut(s) 131, 347
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 25, 514
Hpy188III TCNNGA 1 cut(s) 577
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 195, 349
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 4 cut(s) 78, 163, 211, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 107
HpyF3I CTNAG 3 cut(s) 123, 135, 633
HpySE526I ACGT 1 cut(s) 707
Hsp92II CATG 7 cut(s) 78, 177, 200, 211, 393, 466, 499
Kzo9I GATC 2 cut(s) 40, 362
LmnI GCTCC 2 cut(s) 482, 504
LpnPI CCDG 2 cut(s) 32, 487
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 153, 344
MaeII ACGT 1 cut(s) 707
MalI GATC 2 cut(s) 42, 364
MboI GATC 2 cut(s) 40, 362
MboII GAAGA 4 cut(s) 185, 304, 372, 481
MluCI AATT 1 cut(s) 117
MnlI CCTC 2 cut(s) 43, 642
MroXI GAANNNNTTC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 43, 107
NdeII GATC 2 cut(s) 40, 362
NlaIII CATG 7 cut(s) 78, 177, 200, 211, 393, 466, 499
NlaIV GGNNCC 2 cut(s) 100, 478
NspI RCATGY 3 cut(s) 78, 211, 466
PaeI GCATGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 131, 347
PflMI CCANNNNNTGG 3 cut(s) 17, 174, 570
PsiI TTATAA 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 707
PspN4I GGNNCC 2 cut(s) 100, 478
PspPI GGNCC 1 cut(s) 623
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 1 cut(s) 195
Sau3AI GATC 2 cut(s) 40, 362
Sau96I GGNCC 1 cut(s) 623
SetI ASST 9 cut(s) 39, 54, 112, 293, 345, 522, 543, 634, 710
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 195
SphI GCATGC 1 cut(s) 78
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 481
SspMI CTAG 2 cut(s) 153, 344
StyI CCWWGG 2 cut(s) 152, 696
TaiI ACGT 1 cut(s) 710
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 131, 347
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 4 cut(s) 185, 368, 512, 542
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 3 cut(s) 17, 174, 570
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 1 cut(s) 117
XceI RCATGY 3 cut(s) 78, 211, 466
XmaJI CCTAGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 153, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.