Rorug04G0130400

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
20866738 .. 20867924
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0130400.1

Sequence Viewer

Length: 315 bp
ATGTTTCTTTCGGCTTATCGAGACAAGTCTGGGACTTTGGATGTCATTGAGGAAAAGATTGCAAGAGCAACTATGATTCCCAGGACCCATGGAGAGGCATTCAACGTCTTGCGTTATGAGATTGGGCAGAAGTATAATTCTCATTATGATGCATTCCACCCGGAGGAATATGGTCCACAGACAAGCCAAAGGGTTGTATCATTCCTGTTGTATTTAACTGATGTTGAAGAAGGTGGGGAAACAATGTTTCCATACGAGGCAAGATTCTTATTTTCTCTTTCTTTCTTTCAATGGCTCTTTTTGGTTCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.27

Weight (kDa)

5.06

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_3 PF13640 35 - 83 6.5e-08 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 94, 163
AgsI TTSAA 3 cut(s) 103, 227, 290
AjnI CCWGG 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 84, 173
AsuC2I CCSGG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 84, 173
BciT130I CCWGG 1 cut(s) 82
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 15
Bme1390I CCNGG 2 cut(s) 82, 161
Bme18I GGWCC 2 cut(s) 84, 173
BmgT120I GGNCC 2 cut(s) 84, 173
BmiI GGNNCC 2 cut(s) 86, 306
BmrFI CCNGG 2 cut(s) 82, 161
BmsI GCATC 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 80, 88, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 163
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 3 cut(s) 80, 88, 308
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 94, 163
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 94, 163
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 2 cut(s) 98, 152
Bsp19I CCATGG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 86, 306
BssECI CCNNGG 3 cut(s) 80, 88, 308
BssT1I CCWWGG 2 cut(s) 88, 308
Bst2UI CCWGG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 80, 159
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 84, 173
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 14, 186, 295
CviKI_1 RGCY 3 cut(s) 14, 186, 295
Eco130I CCWWGG 2 cut(s) 88, 308
Eco47I GGWCC 2 cut(s) 84, 173
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 2 cut(s) 88, 308
EcoT22I ATGCAT 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 88, 308
FaeI CATG 1 cut(s) 92
FaiI YATR 7 cut(s) 74, 90, 117, 135, 147, 171, 253
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 88
FokI GGATG 1 cut(s) 53
HapII CCGG 1 cut(s) 161
Hin1II CATG 1 cut(s) 92
HinfI GANTC 2 cut(s) 76, 264
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 62, 152
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 1 cut(s) 92
LpnPI CCDG 5 cut(s) 15, 67, 94, 174, 218
LweI GCATC 1 cut(s) 139
MaeII ACGT 1 cut(s) 105
MboII GAAGA 1 cut(s) 239
MluCI AATT 1 cut(s) 136
MnlI CCTC 4 cut(s) 43, 88, 157, 250
Mph1103I ATGCAT 1 cut(s) 154
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 82, 161
Mva1269I GAATGC 2 cut(s) 98, 152
MvaI CCWGG 1 cut(s) 82
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 88
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 86, 306
NsiI ATGCAT 1 cut(s) 154
PctI GAATGC 2 cut(s) 98, 152
PfeI GAWTC 2 cut(s) 76, 264
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 86, 306
PspPI GGNCC 2 cut(s) 84, 173
PspPPI RGGWCCY 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 215
Sau96I GGNCC 2 cut(s) 84, 173
ScrFI CCNGG 2 cut(s) 82, 161
SetI ASST 2 cut(s) 108, 235
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 2 cut(s) 84, 173
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 80, 159
StyI CCWWGG 2 cut(s) 88, 308
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 136
TfiI GAWTC 2 cut(s) 76, 264
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 84, 173
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.