FvH4_7g32820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000274
Physical Location & Seq
Reverse (-)
23513938 .. 23514746
809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32820.t1

Sequence Viewer

Length: 645 bp
ATGCCTTCTTTTGATTTGGGAATCTCTCCCTGGGTATCTTGGAATAGCCCATTGGTGACTGGAATAATAACCATACCAGAGAAGAATTTCAATACTCCCTCTAGCCCTCAAATCATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTATCTCCACAGGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATTGAGATTGAGCTGACAGAGGAAAACTCTGGAAGGACAGCATCATCCTTGGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAAAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACGAGTATGGACATGTAATTCATACTATTGGTGCTGATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCGAGAGCAATACGGGTTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.5

Weight (kDa)

5.45

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccII CGCG 1 cut(s) 524
AciI CCGC 2 cut(s) 522, 554
AclWI GGATC 3 cut(s) 299, 584, 597
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 450
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 2 cut(s) 91, 580
AjnI CCWGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 3 cut(s) 229, 428, 630
AluI AGCT 3 cut(s) 229, 428, 630
AlwI GGATC 3 cut(s) 299, 584, 597
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 2 cut(s) 311, 372
ApoI RAATTY 1 cut(s) 85
AseI ATTAAT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 67
BamHI GGATCC 1 cut(s) 589
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 31
BfaI CTAG 2 cut(s) 102, 197
BfuAI ACCTGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 492, 591
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 29, 30, 264
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 64, 341
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 3 cut(s) 29, 30, 264
BseGI GGATG 2 cut(s) 260, 276
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 2 cut(s) 64, 341
BseRI GAGGAG 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 524
BshFI GGCC 2 cut(s) 313, 374
BsiSI CCGG 1 cut(s) 314
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 2 cut(s) 313, 374
Bsp143I GATC 3 cut(s) 159, 291, 589
BspACI CCGC 2 cut(s) 522, 554
BspANI GGCC 2 cut(s) 313, 374
BspCNI CTCAG 1 cut(s) 559
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 492, 591
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 3 cut(s) 299, 584, 597
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 2 cut(s) 64, 341
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 29, 30, 264
BssMI GATC 3 cut(s) 159, 291, 589
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 546, 631
BstF5I GGATG 2 cut(s) 260, 276
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 3 cut(s) 162, 294, 592
BstMBI GATC 3 cut(s) 159, 291, 589
BstMWI GCNNNNNNNGC 2 cut(s) 310, 627
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BsuRI GGCC 2 cut(s) 313, 374
BtsCI GGATG 2 cut(s) 260, 276
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 315
CaiI CAGNNNCTG 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 313
CviAII CATG 2 cut(s) 458, 586
CviJI RGCY 8 cut(s) 48, 105, 229, 313, 317, 374, 428, 630
CviKI_1 RGCY 8 cut(s) 48, 105, 229, 313, 317, 374, 428, 630
DdeI CTNAG 2 cut(s) 546, 631
DpnI GATC 3 cut(s) 161, 293, 591
DpnII GATC 3 cut(s) 159, 291, 589
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 461, 589
FatI CATG 2 cut(s) 457, 585
FauNDI CATATG 1 cut(s) 280
FokI GGATG 2 cut(s) 247, 283
FspBI CTAG 2 cut(s) 102, 197
GsaI CCCAGC 1 cut(s) 625
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 2 cut(s) 313, 374
HapII CCGG 1 cut(s) 314
Hin1II CATG 2 cut(s) 461, 589
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 2 cut(s) 21, 544
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 291, 549
Hpy188III TCNNGA 4 cut(s) 197, 246, 295, 407
HpyAV CCTTC 6 cut(s) 15, 243, 303, 364, 425, 544
HpyCH4V TGCA 2 cut(s) 146, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 627
HpyF3I CTNAG 2 cut(s) 546, 631
Hsp92II CATG 2 cut(s) 461, 589
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 159, 291, 589
LmnI GCTCC 1 cut(s) 409
LweI GCATC 1 cut(s) 266
MaeI CTAG 2 cut(s) 102, 197
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 161, 293, 591
MboI GATC 3 cut(s) 159, 291, 589
MboII GAAGA 7 cut(s) 94, 215, 379, 401, 409, 427, 449
MflI RGATCY 1 cut(s) 589
MluCI AATT 2 cut(s) 85, 462
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 5 cut(s) 109, 117, 199, 229, 340
MroNI GCCGGC 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 192, 351
MslI CAYNNNNRTG 1 cut(s) 580
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 310, 627
NaeI GCCGGC 1 cut(s) 315
NdeI CATATG 1 cut(s) 280
NdeII GATC 3 cut(s) 159, 291, 589
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 2 cut(s) 461, 589
NlaIV GGNNCC 2 cut(s) 492, 591
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 461
PasI CCCWGGG 1 cut(s) 30
PciI ACATGT 1 cut(s) 457
PctI GAATGC 1 cut(s) 575
PdiI GCCGGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 21
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PscI ACATGT 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 621
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 492, 591
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 2 cut(s) 192, 351
Sau3AI GATC 3 cut(s) 159, 291, 589
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 31
SetI ASST 7 cut(s) 123, 145, 177, 231, 351, 430, 632
SfaNI GCATC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 580
Sse9I AATT 2 cut(s) 85, 462
SsiI CCGC 2 cut(s) 522, 554
SspMI CTAG 2 cut(s) 102, 197
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 264
TasI AATT 2 cut(s) 85, 462
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 192, 351
Tru9I TTAA 2 cut(s) 192, 351
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 216, 267, 455, 498
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 196
XceI RCATGY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 2 cut(s) 102, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.